Browse Element(s) Details


OsAffx.19133.1.S1_at

Description tigr:9639.m02996
TID=OsAffx.19133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3293011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein
LOC_Os11g32930OsAffx.19133.1.S1_at11/1111+18946620..18947312hypothetical protein
LOC_Os11g32940Os.27512.1.A1_at10/1111+18947503..18952321F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19133.1.S1_at--886--8111Chr11:18946744..18946768 (25 bp)
GGACTTCCGTGATCGTCGTGGTGAC
LOC_Os11g32930
OsAffx.19133.1.S1_at--728--491Chr11:18946755..18946779 (25 bp)
ATCGTCGTGGTGACCGGATCCAATC
LOC_Os11g32930
OsAffx.19133.1.S1_at--459--4331Chr11:18946784..18946808 (25 bp)
CCAGGACGCACGCAAACTGTTTGAT
LOC_Os11g32930
OsAffx.19133.1.S1_at--102--6251Chr11:18946837..18946861 (25 bp)
GATGGTGTGTTCTCGGGCTCGACAA
LOC_Os11g32930
OsAffx.19133.1.S1_at--316--8331Chr11:18946852..18946876 (25 bp)
GGCTCGACAAGTTTTCACAGCTGTT
LOC_Os11g32930
OsAffx.19133.1.S1_at--1010--1611Chr11:18946921..18946945 (25 bp)
AGCTGGTGGGCAGCATCTACGCCGA
LOC_Os11g32930
OsAffx.19133.1.S1_at--597--9851Chr11:18947011..18947035 (25 bp)
TACAAGGCAGGGTGCGTCGGCTACT
LOC_Os11g32930
OsAffx.19133.1.S1_at--523--4651Chr11:18947024..18947048 (25 bp)
GCGTCGGCTACTGAGCATCGCGGAT
LOC_Os11g32930
OsAffx.19133.1.S1_at--294--9391Chr11:18947167..18947191 (25 bp)
TCGAGGACTTCTGGATCCCATCCAT
LOC_Os11g32930
OsAffx.19133.1.S1_at--786--371Chr11:18947190..18947214 (25 bp)
ATCAACCGCCAGCTTGAAGGTCCAG
LOC_Os11g32930
OsAffx.19133.1.S1_at--640--8991Chr11:18947204..18947228 (25 bp)
TGAAGGTCCAGCGTTCGTCGACGGC
LOC_Os11g32930
Target Sequence 
GGACTTCCGTGATCGTCGTGGTGACCGGATCCAATCCACTCCAGGACGCACGCAAACTGTTTGATGGATTGGTTGCCCGG
CGAGACGCACTGGGATGGTGTGTTCTCGGGCTCGACAAGTTTTCACAGCTGTTGGAGAGATACGACGTGCTCTGCGACGA
CAGGAACAAGTTGAGGGAGCTGGTGGGCAGCATCTACGCCGACATGCTCATCGGCGGCTCGTCGGCTCCGGAGGTGGCGC
TGGAGAGCCACGACGCCGCCGACGACGTACAAGGCAGGGTGCGTCGGCTACTGAGCATCGCGGATGGGGCGGACGCGGCA
ACACTTCGCCTGACGCTGCTCGACGACGCCGACGAGGCTCGCCGTCTCTGCCGCGCTGGGTTCCTCCAAGGGCGCCGCGA
CCTCGCCGCCCTCAAGCAGCTAGTCGAGGACTTCTGGATCCCATCCATCAACCGCCAGCTTGAAGGTCCAGCGTTCGTCG
ACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis