Browse Element(s) Details


Os.24138.1.A1_at

Description gb:AK109738.1
DB_XREF= gi:32994947
TID=Os.24138.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C12, full insert sequence.
FL= gb:AK109738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3291011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32870OsAffx.31276.1.S1_at10/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.21416.1.S1_at3/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.55225.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.23167.2.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.25582.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57029.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57362.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein
LOC_Os11g32930OsAffx.19133.1.S1_at11/1111+18946620..18947312hypothetical protein
LOC_Os11g32940Os.27512.1.A1_at10/1111+18947503..18952321F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24138.1.A1_at--48--1031Chr11:18939124..18939148 (25 bp)
AGGTATGGAGCTTCCCAAGGACTTT
LOC_Os11g32910
Os.24138.1.A1_at--775--951Chr11:18939107..18939131 (25 bp)
AGGACTTTGAATCACCTCTTCTTGT
LOC_Os11g32910
Os.24138.1.A1_at--31--7371Chr11:18939050..18939074 (25 bp)
GTGAACTCATCAATCTCCGAGCTGA
LOC_Os11g32910
Os.24138.1.A1_at--978--5891Chr11:18939032..18939056 (25 bp)
GAGCTGACCTGGCTGCTTTGAAGCA
LOC_Os11g32910
Os.24138.1.A1_at--588--1531Chr11:18938996..18939020 (25 bp)
AGCAGTGGCTCCCATGGGCTAATGA
LOC_Os11g32910
Os.24138.1.A1_at--211--7591Chr11:18938981..18939005 (25 bp)
GGGCTAATGATCGTCTATCATCCGC
LOC_Os11g32910
Os.24138.1.A1_at--424--5731Chr11:18938782..18938806 (25 bp)
GACTGAGTCGTTCCGTATAGGCCAC
LOC_Os11g32910
Os.24138.1.A1_at--814--5771Chr11:18938742..18938766 (25 bp)
GACGATGTACATTTCCTGCTGATTT
LOC_Os11g32910
Os.24138.1.A1_at--24--4331Chr11:18938705..18938729 (25 bp)
CCATAGCTGTTATAGGAGATCTCCC
LOC_Os11g32910
Os.24138.1.A1_at--692--5551Chr11:18938674..18938698 (25 bp)
GAAACCTCAATTGCTATTACATAGT
LOC_Os11g32910
Os.24138.1.A1_at--887--5271Chr11:18938637..18938661 (25 bp)
GAATGATTACGATGGATGCCCTTCC
LOC_Os11g32910
Target Sequence 
AGGTATGGAGCTTCCCAAGGACTTTGAATCACCTCTTCTTGTCCCTGCCATTGCTGGGAGGGAGAGAATTCATGGTGAAC
TCATCAATCTCCGAGCTGACCTGGCTGCTTTGAAGCAGCATGTTGAGGAGCAGTGGCTCCCATGGGCTAATGATCGTCTA
TCATCCGCNGGAGTCATCGGAGACCAGATTNTACTAGACATGGAGTGACACGGGCTAATAATGTTCGTCTCACATCTNTG
ATACATTCTACAAGACATGGACTGAGTCAGATTCTACAAGACATGGAGTGACACGGGCTAATAATGCTCGTCTCACCTCT
NTGATACATTCTACAAGACTTNGGACTGAGTCGTTCCGTATAGGCCACNCAAGAAGTGAGAAAGACGATGTACATTTCCT
GCTGATTTCTAAGGATCAAACCATAGCTGTTATAGGAGATCTCCCAGAACTGAAACCTCAATTGCTATTACATAGTTCNA
TACTTGCAGAATGATTACGATGGATGCCCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24138.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis