Browse Element(s) Details


Os.9988.1.S1_at

Description gb:AK063652.1
DB_XREF= gi:32973670
TID=Os.9988.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B03, full insert sequence.
FL= gb:AK063652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3289011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein
LOC_Os11g32870OsAffx.31276.1.S1_at10/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.21416.1.S1_at3/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.55225.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.23167.2.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.25582.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57029.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57362.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein
LOC_Os11g32930OsAffx.19133.1.S1_at11/1111+18946620..18947312hypothetical protein
LOC_Os11g32940Os.27512.1.A1_at10/1111+18947503..18952321F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9988.1.S1_at--927--8791Chr11:18929241..18929265 (25 bp)
TGTTCCGCAAGGTGGCGCACGTGCA
LOC_Os11g32890
Os.9988.1.S1_at--835--8471Chr11:18929229..18929253 (25 bp)
TGGCGCACGTGCAGGACGACGCCTC
LOC_Os11g32890
Os.9988.1.S1_at--55--5411Chr11:18929046..18929070 (25 bp)
GAAGCTGAAGCGTGTGATATAATTG
LOC_Os11g32890
Os.9988.1.S1_at--469--2951Chr11:18929010..18929034 (25 bp)
TAGTGGGTTAATCTGGGTTCTCCTT
LOC_Os11g32890
Os.9988.1.S1_at--155--8631Chr11:18928997..18929021 (25 bp)
TGGGTTCTCCTTGCTTTAATTAGTT
LOC_Os11g32890
Os.9988.1.S1_at--513--211Chr11:18928970..18928994 (25 bp)
ATTTGCTTAATTACTGGTTGCTTTG
LOC_Os11g32890
Os.9988.1.S1_at--805--3891Chr11:18928957..18928981 (25 bp)
CTGGTTGCTTTGTTTTAGTCTTTCA
LOC_Os11g32890
Os.9988.1.S1_at--145--10011Chr11:18928942..18928966 (25 bp)
TAGTCTTTCAAACCGGCTGTACTTT
LOC_Os11g32890
Os.9988.1.S1_at--873--1771Chr11:18928931..18928955 (25 bp)
ACCGGCTGTACTTTTATGAAGTCGA
LOC_Os11g32890
Os.9988.1.S1_at--167--5471Chr11:18928893..18928917 (25 bp)
GAACTGCTTGTACATATGTCAATCC
LOC_Os11g32890
Os.9988.1.S1_at--121--7031Chr11:18928884..18928908 (25 bp)
GTACATATGTCAATCCAGCTTTGAT
LOC_Os11g32890
Target Sequence 
TGTTCCGCAAGGTGGCGCACGTGCAGGACGACGCCTCGCTCCGCGCCGGCGTCGCCGCCGACCCCGTCGCCGAGTACCCG
GCCAGGAAGGCCGTCACCCTCAAGGACGCCGGCGTCGAGCCCCCCGGCATCGAGCAGGGCAGGGAGGGGATCCTCGAGGT
GTTGGGGAAGAAGACCAAGCCCGCCGCCGCTGCTTGAAGCTGAAGCGTGTGATATAATTGCAGTTAATTAGTAGTGGGTT
AATCTGGGTTCTCCTTGCTTTAATTAGTTTTATTTGCTTAATTACTGGTTGCTTTGTTTTAGTCTTTCAAACCGGCTGTA
CTTTTATGAAGTCGATGTGTGTGTTGGGGAACTGCTTGTACATATGTCAATCCAGCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis