Browse Element(s) Details


Os.11375.1.S1_at

Description gb:AK064658.1
DB_XREF= gi:32974676
TID=Os.11375.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G06, full insert sequence.
FL= gb:AK064658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3275911/11expressed protein
LOC_Os11g328594/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32720Os.26803.1.S1_at11/1111+18829542..18834002Zinc knuckle family protein, expressed
LOC_Os11g32730OsAffx.19130.1.S1_at11/1111+18836274..18836675hypothetical protein
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11375.1.S1_at--866--1612Chr11:18911496..18911520 (25 bp)
AGCTGTGGCCAGACATCCAGGAGCA
LOC_Os11g32859
Os.11375.1.S1_at--981--572Chr11:18911510..18911534 (25 bp)
ATCCAGGAGCAGAGGCTTCGCCACG
LOC_Os11g32859
Os.11375.1.S1_at--830--9212Chr11:18911546..18911570 (25 bp)
TCCACATCTGATGCGGCGTTGTATG
LOC_Os11g32859
Os.11375.1.S1_at--373--952Chr11:18911583..18911607 (25 bp)
AGGAAGCTGCTTGGGTCGCTCCTGC
LOC_Os11g32859
Os.11375.1.S1_at--1049--3712Chr11:18911667..18911691 (25 bp)
CTCTGACTAAACTCCGGCCTTATAA
NONE
Os.11375.1.S1_at--98--3932Chr11:18911681..18911705 (25 bp)
CGGCCTTATAACCACTGCGAATTGA
NONE
Os.11375.1.S1_at--1030--6992Chr11:18911706..18911730 (25 bp)
GTACATAAACGTTGCGTTCCTTACT
NONE
Os.11375.1.S1_at--423--6972Chr11:18911771..18911795 (25 bp)
GTAGCCTTTTTTGGTTCAGGTGCAC
NONE
Os.11375.1.S1_at--681--5812Chr11:18911798..18911822 (25 bp)
GACCCAAATGGTGAACTTGTGGATT
NONE
Os.11375.1.S1_at--1031--772Chr11:18911852..18911876 (25 bp)
ATGTGGTCCTGATATGTTTCCGATG
NONE
Os.11375.1.S1_at--868--2992Chr11:18911929..18911953 (25 bp)
AATGATTGAATATGTGCCTTGCCTG
NONE
Target Sequence 
AGCTGTGGCCAGACATCCAGGAGCAGAGGCTTCGCCACGCGCCACCTGACTCCACATCTGATGCGGCGTTGTATGCAGAG
GCTGCAGAGGAAGCTGCTTGGGTCGCTCCTGCGGGCACTCCTCCCGACTGCGATGCCTAGGCGACGCCGGTGACAGGACG
GTGTCCGCCATCTCTGACTAAACTCCGGCCTTATAACCACTGCGAATTGAGTACATAAACGTTGCGTTCCTTACTTANAT
TGAGCTGCTNACATCGTTACTCTAGTTAGAAACAGGTAGCCTTTTTTGGTTCAGGTGCACATGACCCAAATGGTGAACTT
GTGGATTTGAGCAATTTTTTGTTCACNAAATAGGTCATGTGGTCCTGATATGTTTCCGATGATGATCGATCAGCACTGAA
GTTTGTTTTTTGTTCTTGCTATCCCTTTTTGAAAATGATTGAATATGTGCCTTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis