Browse Element(s) Details


OsAffx.19131.1.S1_at

Description tigr:9639.m02978
TID=OsAffx.19131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32720Os.26803.1.S1_at11/1111+18829542..18834002Zinc knuckle family protein, expressed
LOC_Os11g32730OsAffx.19130.1.S1_at11/1111+18836274..18836675hypothetical protein
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19131.1.S1_at--1158--8951Chr11:18847543..18847567 (25 bp)
TCCACGGCCGTTGCGCGGAGTTTGG
LOC_Os11g32740
OsAffx.19131.1.S1_at--439--8631Chr11:18847580..18847604 (25 bp)
TGGGATCCAAAGACGGCGACGCACG
LOC_Os11g32740
OsAffx.19131.1.S1_at--1089--1911Chr11:18847654..18847678 (25 bp)
ACGGTGAGGTGAGGGCACACCCTCC
LOC_Os11g32740
OsAffx.19131.1.S1_at--855--6131Chr11:18847659..18847683 (25 bp)
GAGGTGAGGGCACACCCTCCCTGCA
LOC_Os11g32740
OsAffx.19131.1.S1_at--605--1811Chr11:18847672..18847696 (25 bp)
ACCCTCCCTGCACTGCTTGTGGTTG
LOC_Os11g32740
OsAffx.19131.1.S1_at--267--5111Chr11:18847681..18847705 (25 bp)
GCACTGCTTGTGGTTGTCTTTCTCA
LOC_Os11g32740
OsAffx.19131.1.S1_at--488--9071Chr11:18847685..18847709 (25 bp)
TGCTTGTGGTTGTCTTTCTCATCAT
LOC_Os11g32740
OsAffx.19131.1.S1_at--304--3551Chr11:18847704..18847728 (25 bp)
CATCATCATCGTGGAGAAAGCCGGT
LOC_Os11g32740
OsAffx.19131.1.S1_at--719--411Chr11:18847708..18847732 (25 bp)
ATCATCGTGGAGAAAGCCGGTTTCC
LOC_Os11g32740
OsAffx.19131.1.S1_at--311--5551Chr11:18847719..18847743 (25 bp)
GAAAGCCGGTTTCCAGATCGGCTCC
LOC_Os11g32740
OsAffx.19131.1.S1_at--134--3971Chr11:18847725..18847749 (25 bp)
CGGTTTCCAGATCGGCTCCTCAACG
LOC_Os11g32740
Target Sequence 
TCCACGGCCGTTGCGCGGAGTTTGGTGGTGGGGGCGGTGGGATCCAAAGACGGCGACGCACGGGGGCGGCAGATCCGACG
ACGGTGATGCGCAGGGGCGGTGGATCCGGCGACGGTGAGGTGAGGGCACACCCTCCCTGCACTGCTTGTGGTTGTCTTTC
TCATCATCATCGTGGAGAAAGCCGGTTTCCAGATCGGCTCCTCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis