Browse Element(s) Details


Os.57204.1.S1_at

Description gb:AK111135.1
DB_XREF= gi:32996344
TID=Os.57204.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D07, full insert sequence.
FL= gb:AK111135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g327901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein
LOC_Os11g32810Os.51030.1.S1_at11/1111+18884307..18887261expressed protein
LOC_Os11g32820OsAffx.7280.1.S1_at11/1111+18889036..18889470expressed protein
LOC_Os11g32830Os.37083.2.S1_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32830Os.47130.4.A1_x_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57204.1.S1_at--380--3291Chr08:14895574..14895598 (25 bp)
CACAACCGGCCGTCGGCTTTGTTTG
NONE
Os.57204.1.S1_at--1079--8291Chr08:14895560..14895584 (25 bp)
GGCTTTGTTTGTGCGCCGCCTCCAG
NONE
Os.57204.1.S1_at--657--3771Chr08:14895465..14895489 (25 bp)
CTCTCTGTGCCTGTGAAGAAGAAGG
NONE
Os.57204.1.S1_at--295--1452Chr11:18868535..18868565 (25 bp)
AGAAGAGGACTGACAAGCGGGCCCC
LOC_Os11g32790
Os.57204.1.S1_at--126--5131Chr08:14894844..14894863 (20 bp)
GCACAACAATCCAGAAGATCCGGTT
NONE
Os.57204.1.S1_at--404--1171Chr08:14894829..14894853 (25 bp)
AGATCCGGTTAACATCACAGGAGCT
NONE
Os.57204.1.S1_at--929--7511Chr08:14894801..14894825 (25 bp)
GTGGACACAGCCGACTACGCTAAAG
NONE
Os.57204.1.S1_at--861--1831Chr08:14894785..14894809 (25 bp)
ACGCTAAAGCCCCTGAAGATTTCGA
NONE
Os.57204.1.S1_at--235--1671Chr08:14894778..14894802 (25 bp)
AGCCCCTGAAGATTTCGAGGTGCAA
NONE
Os.57204.1.S1_at--443--10611NONE
TTCGAGGTGCAAGAAGAACCGTATT
NONE
Os.57204.1.S1_at--985--3811Chr08:14893710..14893734 (25 bp)
CTCCACTCAAGCTTATGTCTGTGAA
NONE
Target Sequence 
CACAACCGGCCGTCGGCTTTGTTTGTGCGCCGCCTCCAGCCGCCGTCGCCGTCGCGCGTCAGCCGCCGGAGCCGCCCCTT
CCTTCCCCTCACCGCGCCCTCTCCCTCCTCTCTCTGTGCCTGTGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGG
GAGAAGAAGAAGAAATAAAGGAAAAAGAAGAGGACTGACAAGCGGGCCCCACTGCACAACAATCCAGAAGATCCGGTTAA
CATCACAGGAGCTGACGTGGACACAGCCGACTACGCTAAAGCCCCTGAAGATTTCGAGGTGCAAGAAGAACCGTATTACG
AAGAAGTTCCAGAAGGTAGCGAGGCCTACTTCAATGATGAGTTTTTCTAGGCTTAGTCTCCACTCAAGCTTATGTCTGTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis