Browse Element(s) Details


OsAffx.7280.1.S1_at

Description tigr:9639.m02984
TID=OsAffx.7280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3282011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein
LOC_Os11g32810Os.51030.1.S1_at11/1111+18884307..18887261expressed protein
LOC_Os11g32820OsAffx.7280.1.S1_at11/1111+18889036..18889470expressed protein
LOC_Os11g32830Os.37083.2.S1_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32830Os.47130.4.A1_x_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32840OsAffx.19132.1.S1_at11/1111+18901885..18902214hypothetical protein
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7280.1.S1_at--930--9411Chr11:18889312..18889336 (25 bp)
TCGTGAGGTAGGTGCACTGCCCAAG
LOC_Os11g32820
OsAffx.7280.1.S1_at--1042--1011Chr11:18889307..18889331 (25 bp)
AGGTAGGTGCACTGCCCAAGCACAT
LOC_Os11g32820
OsAffx.7280.1.S1_at--780--5891Chr11:18889272..18889296 (25 bp)
GAGCTGCTCACCACATTCCAGAAGG
LOC_Os11g32820
OsAffx.7280.1.S1_at--1036--71Chr11:18889258..18889282 (25 bp)
ATTCCAGAAGGTGGCAATCGTCGAC
LOC_Os11g32820
OsAffx.7280.1.S1_at--810--7511Chr11:18889195..18889219 (25 bp)
GTGGATCCGTACACCCAGATCAAGG
LOC_Os11g32820
OsAffx.7280.1.S1_at--712--1271Chr11:18889179..18889203 (25 bp)
AGATCAAGGATCTCGACCTCCAAGC
LOC_Os11g32820
OsAffx.7280.1.S1_at--755--2691Chr11:18889158..18889182 (25 bp)
AAGCTCCCGTATTGTCTTGTTCTGT
LOC_Os11g32820
OsAffx.7280.1.S1_at--645--10231Chr11:18889149..18889173 (25 bp)
TATTGTCTTGTTCTGTGTTTTGATT
LOC_Os11g32820
OsAffx.7280.1.S1_at--61--6511Chr11:18889128..18889152 (25 bp)
GATTTTAGGTTCTACCTCCAAGCTC
LOC_Os11g32820
OsAffx.7280.1.S1_at--769--1011Chr11:18889122..18889146 (25 bp)
AGGTTCTACCTCCAAGCTCCTGTGT
LOC_Os11g32820
OsAffx.7280.1.S1_at--29--8811Chr11:18889077..18889101 (25 bp)
TTTGGGTTCTACCTCCAAGCTCCTG
LOC_Os11g32820
Target Sequence 
TCGTGAGGTAGGTGCACTGCCCAAGCACATGATGGAGGCGGAGCTGCTCACCACATTCCAGAAGGTGGCAATCGTCGACG
AGGTCACCATCATCAAGGACAAGAGACCTCTTGTGGTGTGGATCCGTACACCCAGATCAAGGATCTCGACCTCCAAGCTC
CCGTATTGTCTTGTTCTGTGTTTTGATTTTAGGTTCTACCTCCAAGCTCCTGTGTTGTCTTGTTCTGCGTTTGATTTTGG
GTTCTACCTCCAAGCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis