Browse Element(s) Details


Os.27512.1.A1_at

Description gb:AK069909.1
DB_XREF= gi:32979933
TID=Os.27512.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037G05, full insert sequence.
FL= gb:AK069909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3294010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein
LOC_Os11g32930OsAffx.19133.1.S1_at11/1111+18946620..18947312hypothetical protein
LOC_Os11g32940Os.27512.1.A1_at10/1111+18947503..18952321F-box domain containing protein, expressed
LOC_Os11g32950NANA11+18974231..18975112hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27512.1.A1_at--702--1571NONE
AGCTCTCGTTTTTCATCTGGAAGAT
NONE
Os.27512.1.A1_at--137--8571Chr11:18947945..18947969 (25 bp)
TGGATTTTCAGCAGGCCGTTCAAGC
LOC_Os11g32940
Os.27512.1.A1_at--407--10771Chr11:18947919..18947943 (25 bp)
TTGAGCTTGCTCTGTATTTCGTGGA
LOC_Os11g32940
Os.27512.1.A1_at--914--6851Chr11:18947906..18947930 (25 bp)
GTATTTCGTGGAGAACTCACCAGCA
LOC_Os11g32940
Os.27512.1.A1_at--412--5471Chr11:18947878..18947902 (25 bp)
GAACTCCTGATTCTTGATCATCGGC
LOC_Os11g32940
Os.27512.1.A1_at--980--6431Chr11:18947863..18947887 (25 bp)
GATCATCGGCTTGACAGATCTGTTT
LOC_Os11g32940
Os.27512.1.A1_at--342--6411Chr11:18947847..18947871 (25 bp)
GATCTGTTTGCCGAATCACTTTTGG
LOC_Os11g32940
Os.27512.1.A1_at--451--271Chr11:18947771..18947795 (25 bp)
ATATGTTAGCAATGCGATTCCTCGC
LOC_Os11g32940
Os.27512.1.A1_at--313--6591Chr11:18947756..18947780 (25 bp)
GATTCCTCGCCGTGTTAGATTATCA
LOC_Os11g32940
Os.27512.1.A1_at--45--6291Chr11:18947629..18947653 (25 bp)
GATGTTTTGGTCTCTCAATCTATGA
LOC_Os11g32940
Os.27512.1.A1_at--481--7611Chr11:18947536..18947560 (25 bp)
GGGCAATGAGATGTACTACCTCCAT
LOC_Os11g32940
Target Sequence 
AGCTCTCGTTTTTCATCTGGAAGATATAGAGGAGCCATTTTGTTACATGGAAAAGGAAGCAGAGTTGAGAAGTCTGGAGA
AACATTGTCCACATAAAAACCTCAAGTTGGTCAAAATGACTGGATTTTCAGCAGGCCGTTCAAGCCTTGAGCTTGCTCTG
TATTTCGTGGAGAACTCACCAGCACTAGAACTCCTGATTCTTGATCATCGGCTTGACAGATCTGTTTGCCGAATCACTTT
TGGTGGTGACTTGGATGCGAAATGCTCGAAAGGATATGAACACACTATCTCCAAATATGTTAGCAATGCGATTCCTCGCC
GTGTTAGATTATCATATTCCTAATGTAGCACAAACAAGTTGCACGTGGTGCGAGTTGCAGTGCTAGGACTGCTACAGTAG
AAATTAAAATTGCAACGACAGCTGTATAAATTGTAAGATGTTTTGGTCTCTCAATCTATGATGTGATCAGGTAATTAAAT
GACANANNAGTGCAGTAAAAGTGCAAGTATATAGTAGATCAATGGCAATGGGCAATGAGATGTACTACCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27512.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis