Browse Element(s) Details


Os.24689.1.S1_at

Description gb:AK067576.1
DB_XREF= gi:32977594
TID=Os.24689.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108B11, full insert sequence.
FL= gb:AK067576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4516011/11TENA/THI-4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24689.1.S1_at--815--10851Chr08:28215667..28215691 (25 bp)
TTGGTGTTTCATTTGTTCCTCTGTT
LOC_Os08g45160
Os.24689.1.S1_at--30--10671Chr08:28215652..28215676 (25 bp)
TTCCTCTGTTCACTGGGTTGGTAGA
LOC_Os08g45160
Os.24689.1.S1_at--128--3211Chr08:28215588..28215612 (25 bp)
CAAGGCACGGTCTGGAATTCTTTAT
LOC_Os08g45160
Os.24689.1.S1_at--68--3971Chr08:28215562..28215586 (25 bp)
CGGTTTCTAGCTGGTCGGAGGTACA
LOC_Os08g45160
Os.24689.1.S1_at--369--6151Chr08:28215545..28215569 (25 bp)
GAGGTACAGGCTTTCATCCTGGGAA
LOC_Os08g45160
Os.24689.1.S1_at--356--7331Chr08:28215492..28215516 (25 bp)
GTGAATCGTTTTCCTTGGCAAACAA
LOC_Os08g45160
Os.24689.1.S1_at--901--4051Chr08:28215432..28215456 (25 bp)
CGAGTAAAACTCGATGTGGCCATTT
LOC_Os08g45160
Os.24689.1.S1_at--46--10411Chr08:28215408..28215432 (25 bp)
TTATTAAAGCCGCATGCGTGCCGAC
LOC_Os08g45160
Os.24689.1.S1_at--359--4071Chr08:28215387..28215411 (25 bp)
CGACTCTCTTCCTGTACGAATGAAT
LOC_Os08g45160
Os.24689.1.S1_at--1157--6551Chr08:28215315..28215339 (25 bp)
GATTACACAATCGATGGACCCCTTT
LOC_Os08g45160
Os.24689.1.S1_at--322--3111Chr08:28215253..28215277 (25 bp)
AATTTCCGGAGTGTTTCCTGGCATT
LOC_Os08g45160
Target Sequence 
TTGGTGTTTCATTTGTTCCTCTGTTCACTGGGTTGGTAGAGAAGCAGAGGCGAATAGAAAAGGAAGAATCATCCATCTTC
AAGGCACGGTCTGGAATTCTTTATACGGTTTCTAGCTGGTCGGAGGTACAGGCTTTCATCCTGGGAAATGATTTCAGCTG
ATTGCTGGTGNCCTTGTGAATCGTTTTCCTTGGCAAACAAGTGTACAAGACTGGTGCNAATTGATGGACTTGATACGAGT
AAAACTCGATGTGGCCATTTTATTAAAGCCGCATGCGTGCCGACTCTCTTCCTGTACGAATGAATTGAATACCTTGTGTT
GTGCGATGGTTTTGTATGATCAATGTGTCATTGATTACACAATCGATGGACCCCTTTTCATTCGGGGGTCATTTCATATA
TATATNNTTTTACTTTAATTTCCGGAGTGTTTCCTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis