Browse Element(s) Details


Os.38992.1.A1_x_at

Description gb:D43281
DB_XREF= gi:3107541
DB_XREF=D43281
CLONE=SS173
TID=Os.38992.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38992 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g223701/11hypothetical protein
LOC_Os08g451201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22340NANA8+13329727..13335234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22354Os.10871.1.S1_at11/118+13339181..13346628Polyadenylate-binding protein 2, putative, expressed
LOC_Os08g22370OsAffx.29306.1.S1_at11/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.24405.1.S1_at3/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.39684.2.S1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.29667.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.7641.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.38992.1.A1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22380Os.46874.2.S1_at11/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22380Os.46874.1.S1_x_at4/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22389NANA8+13372760..13373040hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38992.1.A1_x_at--769--3595Chr02:17316753..17316777 (25 bp)
CTTGGATAGAAACCTAATTCGAAAT
NONE
Os.38992.1.A1_x_at--1034--7871Chr02:17316811..17316835 (25 bp)
GGTTTTCTACTTTTACATTCTCTGC
NONE
Os.38992.1.A1_x_at--242--2055Chr09:2638319..2638338 (20 bp)
ACTTTTACATTCTCTGCTTTCTGCA
NONE
Os.38992.1.A1_x_at--228--435Chr08:28196878..28196901 (24 bp)
ATCATTTCATACATTCATTGTTGAC
LOC_Os08g45120
Os.38992.1.A1_x_at--555--9471Chr02:17317090..17317114 (25 bp)
TCTGTTGTATTAGTTAACCACAAAT
NONE
Os.38992.1.A1_x_at--605--6631Chr02:17317093..17317117 (25 bp)
GTTGTATTAGTTAACCACAAATTTG
NONE
Os.38992.1.A1_x_at--876--4234Chr08:28197156..28197180 (25 bp)
CCTTTGGAGCCTTATTCAAACGTAT
NONE
Os.38992.1.A1_x_at--408--10234Chr08:28197158..28197182 (25 bp)
TTTGGAGCCTTATTCAAACGTATGC
NONE
Os.38992.1.A1_x_at--29--8534Chr08:28197160..28197184 (25 bp)
TGGAGCCTTATTCAAACGTATGCAA
NONE
Os.38992.1.A1_x_at--982--8074Chr08:28197161..28197185 (25 bp)
GGAGCCTTATTCAAACGTATGCAAT
NONE
Os.38992.1.A1_x_at--383--5874Chr08:28197162..28197186 (25 bp)
GAGCCTTATTCAAACGTATGCAATG
NONE
Target Sequence 
CTTGGATAGAAACCTAATTCGAAATTTTATTAAATACTGCTGCATTTAAAACATTACAGGTTTTCTACTTTTACATTCTC
TGCTTTCTGCAAGTAAACCTAGCTTTACACAGATATTATCATTTCATACATTCATTGTTGACTAATATAATAGCTTGCTG
AGNACGTTGTACNCACCCNTTGCTTCAANCCCCNCNTTTTCAAAGNCCATTTGGAGNTTGTGCCGAAGCTGGGAGTTCAG
TCATATAAGTTAANTTCATTTCAACCTAATTNTCAAGTNTAGATTAGATAGATGGTTTAAGTCTATAGCCAAACATTAGA
GTTAAGTAANTCTATAGCTTCTGTTGTATTAGTTAACCACAAATTTGTAAATNCCTATATATTTTGTAATAATATCNCCT
TTGGAGCCTTATTCAAACGTATGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38992.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis