Browse Element(s) Details


Os.39684.2.S1_x_at

Description gb:CF315890
DB_XREF= gi:33687651
DB_XREF=HD--04-P15.g1
CLONE=HD--04-P15
TID=Os.39684.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39684 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g223701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22340NANA8+13329727..13335234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22354Os.10871.1.S1_at11/118+13339181..13346628Polyadenylate-binding protein 2, putative, expressed
LOC_Os08g22370OsAffx.29306.1.S1_at11/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.24405.1.S1_at3/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.39684.2.S1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.29667.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.7641.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.38992.1.A1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22380Os.46874.2.S1_at11/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22380Os.46874.1.S1_x_at4/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22389NANA8+13372760..13373040hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39684.2.S1_x_at--884--10173Chr04:10950750..10950774 (25 bp)
TATAGTTCCCCTAGCTAAATCCTTG
NONE
Os.39684.2.S1_x_at--354--4653Chr04:10950947..10950971 (25 bp)
GCGTCGTCCGGGAACACAAGTTGCC
NONE
Os.39684.2.S1_x_at--73--5731NONE
GACTGACAGAGTCGAATTGATGTTC
NONE
Os.39684.2.S1_x_at--864--1971Chr12:10191680..10192049 (25 bp)
ACTGACAGAGTCGAATTGATGTTCT
NONE
Os.39684.2.S1_x_at--969--3851Chr12:10191679..10191699 (21 bp)
CTGACAGAGTCGAATTGATGTTCTT
NONE
Os.39684.2.S1_x_at--379--8951Chr12:10191678..10191699 (22 bp)
TGACAGAGTCGAATTGATGTTCTTA
NONE
Os.39684.2.S1_x_at--390--5651Chr12:10191677..10191699 (23 bp)
GACAGAGTCGAATTGATGTTCTTAC
NONE
Os.39684.2.S1_x_at--42--5214Chr09:14246691..14246712 (22 bp)
GAATTGATGTTCTTACCGAAGCTGG
NONE
Os.39684.2.S1_x_at--308--6836Chr04:10953176..10953200 (25 bp)
GTTTCATTCTAACTTAATTCGCAAA
NONE
Os.39684.2.S1_x_at--419--10553Chr04:10953178..10953202 (25 bp)
TTCATTCTAACTTAATTCGCAAATA
NONE
Os.39684.2.S1_x_at--754--3594Chr04:10953180..10953204 (25 bp)
CATTCTAACTTAATTCGCAAATATA
NONE
Target Sequence 
TATAGTTCCCCTAGCTAAATCCTTGCACCACTGACTCCCCCTCCCTCCGGCGAATCCATTTTTCCCGTTTTCCCCTTCTN
CCCCACCCCATAGCAACCACCACAACTACCTCCTTTGCAGCCGAAGAGAAGCTCTTCTACTTGCCGTTCCGGCCAACTCC
TCATCTCCCTCTGCCGGAAACCATCCTCCCCAGATGCGCGTCGTCCGGGAACACAAGTTGCCGCCGACGTCGCCGATCCC
CGGCCACTGGAGCCCCAGCGCCCCTTCTCTCTCTCTCTCTCTCTCTCTNNGTGTTGTTACACGGGAAGAAGGAGAGGAGG
AGGAAGATGACGGGAGGAAGAAGAAGAAAGAAGAGAAAAANAAAAANAAAGACTGACAGAGTCGAATTGATGTTCTTACC
GAAGCTGGGAGTTCAATCACATAAGTTAGTTTCATTCTAACTTAATTCGCAAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39684.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis