Browse Element(s) Details


Os.52522.1.S1_at

Description gb:AK067640.1
DB_XREF= gi:32977658
TID=Os.52522.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110N01, full insert sequence.
FL= gb:AK067640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4513011/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45100NANA8+28183871..28184798hypothetical protein
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52522.1.S1_at--777--6031Chr08:28208689..28208713 (25 bp)
GAGATGCATCCGTGGTTTACCCGGA
LOC_Os08g45130
Os.52522.1.S1_at--348--9971Chr08:28208627..28208651 (25 bp)
TACCGACTCGACGTGTCACAGAGGA
LOC_Os08g45130
Os.52522.1.S1_at--1039--1291Chr08:28208608..28208632 (25 bp)
AGAGGAGGAACGTGGCTTGCTACAT
LOC_Os08g45130
Os.52522.1.S1_at--515--9051Chr08:28208573..28208597 (25 bp)
TGCAGTCCGAATGTGTTCCTTCAAT
LOC_Os08g45130
Os.52522.1.S1_at--1019--5251Chr08:28208525..28208549 (25 bp)
GAATCCTACCCTCACATGATGGTGT
LOC_Os08g45130
Os.52522.1.S1_at--1028--3011Chr08:28208478..28208502 (25 bp)
AATGCGGGATCTGTCCATCGACTAT
LOC_Os08g45130
Os.52522.1.S1_at--66--9371Chr08:28208461..28208485 (25 bp)
TCGACTATGGCTTGGACTAGGGTCC
LOC_Os08g45130
Os.52522.1.S1_at--174--9031Chr08:28208370..28208394 (25 bp)
TGCAAATGGCCCCACAGACAGTTGG
LOC_Os08g45130
Os.52522.1.S1_at--975--2131Chr08:28208353..28208377 (25 bp)
ACAGTTGGCTCGTCTTTTTGGATAT
LOC_Os08g45130
Os.52522.1.S1_at--591--5011Chr08:28208317..28208341 (25 bp)
GCAGGTATCTCTTTTTGGGTACCCA
LOC_Os08g45130
Os.52522.1.S1_at--774--8631Chr08:28208302..28208326 (25 bp)
TGGGTACCCATAGTGCTCTCATTTT
LOC_Os08g45130
Target Sequence 
GAGATGCATCCGTGGTTTACCCGGACAGGGTACCCCATTTCCCCCTATTTGCAGGGGCGCGCTACCGACTCGACGTGTCA
CAGAGGAGGAACGTGGCTTGCTACATTAGCCACAGCTGCAGTCCGAATGTGTTCCTTCAATATGTAATCCGTGGCAATGA
GGATGAATCCTACCCTCACATGATGGTGTTTGCCATGGAGACCATCCCTCCAATGCGGGATCTGTCCATCGACTATGGCT
TGGACTAGGGTCCATGAGGGGGGAGGAGGGATCAATGGCTGGTAACTGGTTTTGGCGGGCTGAGGCAACGTTAGGAAGCT
GCAAATGGCCCCACAGACAGTTGGCTCGTCTTTTTGGATATTTTGTAGGTGAGCAGGTATCTCTTTTTGGGTACCCATAG
TGCTCTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis