Browse Element(s) Details


OsAffx.532.1.S1_x_at

Description gb:XM_354154.1
DB_XREF= gi:35189741
GEN=B1130E10.12
TID=OsAffx.532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g450801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45040OsAffx.17519.1.S1_s_at11/118+28139495..28141626Zinc finger protein 593, putative, expressed
LOC_Os08g45050NANA8+28155104..28155448hypothetical protein
LOC_Os08g45060NANA8+28157601..28159637Leucine Rich Repeat family protein, expressed
LOC_Os08g45070NANA8+28160719..28161803expressed protein
LOC_Os08g45080Os.11811.1.S1_at11/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.17451.1.S1_at4/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.532.1.S1_x_at1/118+28162231..28172498expressed protein
LOC_Os08g45090NANA8+28178412..28178981hypothetical protein
LOC_Os08g45100NANA8+28183871..28184798hypothetical protein
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.532.1.S1_x_at--911--9113Chr10:20769472..20769493 (22 bp)
TGCTGAAAGAAGCAAATCATCCTTC
NONE
OsAffx.532.1.S1_x_at--1126--5551NONE
GAAAGAAGCAAATCATCCTTCAAAC
NONE
OsAffx.532.1.S1_x_at--188--5391NONE
GAAGCAAATCATCCTTCAAACATGC
NONE
OsAffx.532.1.S1_x_at--834--2711NONE
AAGCAAATCATCCTTCAAACATGCA
NONE
OsAffx.532.1.S1_x_at--459--4311Chr07:6694799..6694821 (23 bp)
CCTTCAAACATGCAATTGCTTGTGT
NONE
OsAffx.532.1.S1_x_at--1056--9692Chr08:28162376..28162403 (23 bp)
TCAAACATGCAATTGCTTGTGTACA
LOC_Os08g45080
OsAffx.532.1.S1_x_at--723--4931Chr07:6694782..6694806 (25 bp)
GCTTGTGTACAAAGGATTTGTCTTT
NONE
OsAffx.532.1.S1_x_at--149--7951Chr07:6694769..6694793 (25 bp)
GGATTTGTCTTTCAGTTTTCATTAA
NONE
OsAffx.532.1.S1_x_at--883--3431Chr07:6694757..6694781 (25 bp)
CAGTTTTCATTAATAGGAACCCCTG
NONE
OsAffx.532.1.S1_x_at--771--5431Chr07:6694741..6694765 (25 bp)
GAACCCCTGAATTGAAGAAACGGCT
NONE
OsAffx.532.1.S1_x_at--1024--2731Chr07:6694727..6694751 (25 bp)
AAGAAACGGCTCTGGAGTGCTTATG
NONE
Target Sequence 
TGCTGAAAGAAGCAAATCATCCTTCAAACATGCAATTGCTTGTGTACAAAGGATTTGTCTTTCAGTTTTCATTAATAGGA
ACCCCTGAATTGAAGAAACGGCTCTGGAGTGCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.532.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis