Browse Element(s) Details


Os.11811.1.S1_at

Description gb:AK071244.1
DB_XREF= gi:32981267
TID=Os.11811.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088K02, full insert sequence.
FL= gb:AK071244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4508011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45040OsAffx.17519.1.S1_s_at11/118+28139495..28141626Zinc finger protein 593, putative, expressed
LOC_Os08g45050NANA8+28155104..28155448hypothetical protein
LOC_Os08g45060NANA8+28157601..28159637Leucine Rich Repeat family protein, expressed
LOC_Os08g45070NANA8+28160719..28161803expressed protein
LOC_Os08g45080Os.11811.1.S1_at11/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.17451.1.S1_at4/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.532.1.S1_x_at1/118+28162231..28172498expressed protein
LOC_Os08g45090NANA8+28178412..28178981hypothetical protein
LOC_Os08g45100NANA8+28183871..28184798hypothetical protein
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11811.1.S1_at--691--5531Chr08:28162729..28162753 (25 bp)
GAAACTCGGATGACCTGTCGACCAA
LOC_Os08g45080
Os.11811.1.S1_at--1101--9991Chr08:28162669..28162693 (25 bp)
TAGCTGAGCCCATGTCACTAAGAGA
LOC_Os08g45080
Os.11811.1.S1_at--36--8511Chr08:28162581..28162605 (25 bp)
TGGAGGCAGTTTCAGTTCGAGCTAT
LOC_Os08g45080
Os.11811.1.S1_at--193--3171Chr08:28162544..28162568 (25 bp)
AATTGCGTGGGTGCTTAATCCCCAT
LOC_Os08g45080
Os.11811.1.S1_at--959--5071Chr08:28162501..28162525 (25 bp)
GCACCAATCTTCGTTTTGCATCGAT
LOC_Os08g45080
Os.11811.1.S1_at--383--3551Chr08:28162483..28162507 (25 bp)
CATCGATATTGTGCGATCGCTTGCA
LOC_Os08g45080
Os.11811.1.S1_at--824--10651Chr08:28162463..28162487 (25 bp)
TTGCACGCCCTTAACTGGAACGGTT
LOC_Os08g45080
Os.11811.1.S1_at--335--2571Chr08:28162445..28162469 (25 bp)
AACGGTTAATGCATCGCTCTATAAA
LOC_Os08g45080
Os.11811.1.S1_at--838--10231Chr08:28162327..28162351 (25 bp)
TTTGGAAATCCTCCCTGTTTACTAG
LOC_Os08g45080
Os.11811.1.S1_at--333--8411Chr08:28162288..28162312 (25 bp)
GGCCCCTCTTGTACAGAACAGTCTA
LOC_Os08g45080
Os.11811.1.S1_at--962--3811Chr08:28162260..28162284 (25 bp)
CTCCAGCCTGGTTTGATTCTAATAT
LOC_Os08g45080
Target Sequence 
GAAACTCGGATGACCTGTCGACCAAAGCGAGGTCGAAGTTCAGCATATTGCTTCGGGGTTTAGCTGAGCCCATGTCACTA
AGAGAAATTGCGAGGACGTGGGACGCGTGTGCCCGCAAAGTAATTGCTGAGTATGCTCAACAGACTGGTGGAGGCAGTTT
CAGTTCGAGCTATGGTTGTTGGGAAAATTGCGTGGGTGCTTAATCCCCATTCTTCTTCAGTCCTGCTGGCACCAATCTTC
GTTTTGCATCGATATTGTGCGATCGCTTGCACGCCCTTAACTGGAACGGTTAATGCATCGCTCTATAAATATATGCACAT
AAATATATGTAACCATAATTAACATTTTAGCAAACATGCNATTGCTACTGGTGTGTACTTATTTATTATGTGTGGTTGTA
CTTTTGGAAATCCTCCCTGTTTACTAGNTGGATTTGGTAGCGGCCCCTCTTGTACAGAACAGTCTACATCTCCAGCCTGG
TTTGATTCTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis