Browse Element(s) Details


OsAffx.16961.1.S1_at

Description tigr:9636.m01243
TID=OsAffx.16961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1267011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12620Os.48015.1.A1_x_at1/118+7458351..7458743retrotransposon protein, putative, unclassified
LOC_Os08g12630OsAffx.5794.1.S1_at10/118+7464383..7465418hypothetical protein
LOC_Os08g12640NANA8+7469281..7472083hypothetical protein
LOC_Os08g12650OsAffx.22699.1.S1_x_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12650OsAffx.20615.1.S1_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12650OsAffx.8201.1.S1_x_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12660OsAffx.16960.1.S1_at10/118+7479598..7480571hypothetical protein
LOC_Os08g12660OsAffx.29667.1.S1_at1/118+7479598..7480571hypothetical protein
LOC_Os08g12670OsAffx.16961.1.S1_at11/118+7481445..7481831hypothetical protein
LOC_Os08g12680OsAffx.5795.1.S1_at11/118+7482311..7504175zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os08g12680Os.56070.1.S1_x_at1/118+7482311..7504175zinc finger domain, LSD1 subclass family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16961.1.S1_at--797--3371Chr08:7481743..7481767 (25 bp)
CAGCTCAAGGCCACGACACTCAAGG
LOC_Os08g12670
OsAffx.16961.1.S1_at--82--2191Chr08:7481728..7481752 (25 bp)
ACACTCAAGGCTTGGCGTGCGGCGT
LOC_Os08g12670
OsAffx.16961.1.S1_at--984--1031Chr08:7481698..7481722 (25 bp)
AGGTGCTCCCGACGAACAAGCTGGC
LOC_Os08g12670
OsAffx.16961.1.S1_at--213--2691Chr08:7481681..7481705 (25 bp)
AAGCTGGCCCACCAGGGAGGCCATC
LOC_Os08g12670
OsAffx.16961.1.S1_at--949--3451Chr08:7481669..7481693 (25 bp)
CAGGGAGGCCATCGCTATGCAAAGT
LOC_Os08g12670
OsAffx.16961.1.S1_at--497--531Chr08:7481659..7481683 (25 bp)
ATCGCTATGCAAAGTGGCCATCTCT
LOC_Os08g12670
OsAffx.16961.1.S1_at--494--1091Chr08:7481647..7481671 (25 bp)
AGTGGCCATCTCTATGCAGAACGAC
LOC_Os08g12670
OsAffx.16961.1.S1_at--719--4431Chr08:7481643..7481667 (25 bp)
GCCATCTCTATGCAGAACGACGCGA
LOC_Os08g12670
OsAffx.16961.1.S1_at--36--1451Chr08:7481630..7481654 (25 bp)
AGAACGACGCGAGGCACACCGGTGA
LOC_Os08g12670
OsAffx.16961.1.S1_at--756--8231Chr08:7481528..7481642 (25 bp)
GGCACACCGGTGACGGGAAAGCAAT
LOC_Os08g12670
OsAffx.16961.1.S1_at--561--2211Chr08:7481487..7481511 (25 bp)
AAAGTGCGTACGAGAACGGAGGCTA
LOC_Os08g12670
Target Sequence 
CAGCTCAAGGCCACGACACTCAAGGCTTGGCGTGCGGCGTCGCGGAGGTGCTCCCGACGAACAAGCTGGCCCACCAGGGA
GGCCATCGCTATGCAAAGTGGCCATCTCTATGCAGAACGACGCGAGGCACACCGGTGACGGGAAAGCAATCACCAATGGT
AGGGACAAAGTGCGTACGAGAACGGAGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis