Browse Element(s) Details


Os.6093.2.S1_at

Description gb:AK121138.1
DB_XREF= gi:37990761
TID=Os.6093.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077F05, full insert sequence.
FL= gb:AK065056.1 gb:AK067211.1 gb:AK121138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0211011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02120OsAffx.25837.1.S1_at11/114+684309..686831hypothetical protein
LOC_Os04g02130NANA4+694746..695321retrotransposon protein, putative, unclassified
LOC_Os04g02140NANA4+697336..702030transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6093.2.S1_at--922--9631Chr04:673224..673248 (25 bp)
TCAGGCTCATCCCTTGGAGACATGA
LOC_Os04g02110
Os.6093.2.S1_at--1138--8771Chr04:673157..673181 (25 bp)
TGTTTAGGATCTCTTCATCACCTCG
LOC_Os04g02110
Os.6093.2.S1_at--367--391Chr04:673141..673165 (25 bp)
ATCACCTCGTCTCTTTATATTTCTT
LOC_Os04g02110
Os.6093.2.S1_at--829--10471Chr04:673114..673138 (25 bp)
TTAAGCCAGGGTTGGACGGCCATCT
LOC_Os04g02110
Os.6093.2.S1_at--679--4431Chr04:673096..673120 (25 bp)
GCCATCTCCTTGCTAGGCTGAAGAA
LOC_Os04g02110
Os.6093.2.S1_at--963--2071Chr04:673061..673085 (25 bp)
ACATCCTAGTCTCTGTTTTTAGCCT
LOC_Os04g02110
Os.6093.2.S1_at--575--271Chr04:673015..673039 (25 bp)
ATAGAGGTTAGGCTTCTCTTCCATC
LOC_Os04g02110
Os.6093.2.S1_at--212--4351Chr04:672962..672986 (25 bp)
CCAGTTGCTGGTCTAGGGCTTTGAA
LOC_Os04g02110
Os.6093.2.S1_at--969--3031Chr04:672843..672867 (25 bp)
AATCCTAGTGTGCTGGCTGTAATTC
LOC_Os04g02110
Os.6093.2.S1_at--1126--10491Chr04:672821..672845 (25 bp)
TTCAAGGCGCCTTATGGTGCTTGGC
LOC_Os04g02110
Os.6093.2.S1_at--90--471Chr04:672765..672789 (25 bp)
ATCTCGATAGGTCGTTAGCCCGTAT
LOC_Os04g02110
Target Sequence 
TCAGGCTCATCCCTTGGAGACATGAGAGATGAGCGACCATACAATACAAGGCCAATGTATTCTGATCTGTTTAGGATCTC
TTCATCACCTCGTCTCTTTATATTTCTTTGTTAAGCCAGGGTTGGACGGCCATCTCCTTGCTAGGCTGAAGAAACAATGG
AACACATCCTAGTCTCTGTTTTTAGCCTTCAGAATTGAAAGTTGATCCTATAGAGGTTAGGCTTCTCTTCCATCTCCCCA
ACTCTTGACACAAACAACTTCTCCAGTTGCTGGTCTAGGGCTTTGAAGGGCACAAGAAAGTAGGATAAGAAAGGATTTAA
CTCGCTTAATTTGTTTTGGAAATCTAGAAGCAATGGGAGCGATTGCATGTTTAATGGTGCAAATCCTAGTGTGCTGGCTG
TAATTCAAGGCGCCTTATGGTGCTTGGCTGGTGCTTCTGAGCTCCGTGGGGGTGCTCGAATCTCGATAGGTCGTTAGCCC
GTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6093.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis