Browse Element(s) Details


Os.5345.1.S1_at

Description gb:AK072794.1
DB_XREF= gi:32982817
TID=Os.5345.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1080D07.11 (B1080D07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138M03, full insert sequence.
FL= gb:AK072794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3162911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31590NANA1+17614158..17614433transposon protein, putative, unclassified
LOC_Os01g31600NANA1+17621175..17622995retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31610Os.35596.1.S1_at11/111+17628813..17630551tyrosyl-tRNA synthetase family protein, expressed
LOC_Os01g31629OsAffx.2127.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629Os.5345.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.25836.1.S1_at4/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.19690.1.S1_at1/111+17636151..17652606expressed protein
LOC_Os01g31629Os.17546.2.S1_x_at1/111+17636151..17652606expressed protein
LOC_Os01g31650Os.47130.4.A1_x_at6/111+17653740..17655084retrotransposon protein, putative, unclassified
LOC_Os01g31660NANA1+17657233..17659658retrotransposon protein, putative, unclassified
LOC_Os01g31670NANA1+17662625..17664953retrotransposon protein, putative, unclassified
LOC_Os01g31680Os.1606.2.S1_a_at10/111+17668048..17673251Sec-independent protein translocase TatC containing protein, expressed
LOC_Os01g31690Os.28438.1.S1_x_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_s_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.2.S1_a_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_x_at8/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5345.1.S1_at--1162--2371Chr01:17636620..17636644 (25 bp)
AAACGCAGCAGCTCCTTGATCAGAG
LOC_Os01g31629
Os.5345.1.S1_at--29--1451Chr01:17636500..17636524 (25 bp)
AGAAGCTCCGTTGAAGACCTGCTCA
LOC_Os01g31629
Os.5345.1.S1_at--177--5911Chr01:17636415..17636439 (25 bp)
GAGCTCGTTGCTACATGTGATCGTT
LOC_Os01g31629
Os.5345.1.S1_at--713--511Chr01:17636396..17636420 (25 bp)
ATCGTTTTCTAATCAGCATCGGCTA
LOC_Os01g31629
Os.5345.1.S1_at--1136--8591Chr01:17636344..17636368 (25 bp)
TGGTCTGGCTTAGGAACATACTTTC
LOC_Os01g31629
Os.5345.1.S1_at--148--7331Chr01:17636314..17636338 (25 bp)
GTGCTATCTCATATTGTTGGTGGGT
LOC_Os01g31629
Os.5345.1.S1_at--656--9771Chr01:17636290..17636314 (25 bp)
TAATGGGTTCATGGGTTTCTGAGAC
LOC_Os01g31629
Os.5345.1.S1_at--690--7871Chr01:17636277..17636301 (25 bp)
GGTTTCTGAGACGAGCATGCTGCCC
LOC_Os01g31629
Os.5345.1.S1_at--995--4771Chr01:17636259..17636283 (25 bp)
GCTGCCCAGCTTATATTGAAGGTTT
LOC_Os01g31629
Os.5345.1.S1_at--938--1951Chr01:17636234..17636258 (25 bp)
ACTGAGGACCAGTCATTTTGTTTAA
LOC_Os01g31629
Os.5345.1.S1_at--789--4331Chr01:17636195..17636219 (25 bp)
CCATGCCATTGCAAACTCATTGTAT
LOC_Os01g31629
Target Sequence 
AAACGCAGCAGCTCCTTGATCAGAGGAAGGATTTGATCACAAAGTACAGAAGCTCCGTTGAAGACCTGCTCAAGGGGGAT
ACNAGAAGATAGTAACATGGTGACTGTATGGTAGNGTTGGAATGTTAAAGAGGAGCTCGTTGCTACATGTGATCGTTTTC
TAATCAGCATCGGCTACTTNTGTAATCGAGGTAGCCTTGAAGTTGGTCTGGCTTAGGAACATACTTTCAGTTTGTGCTAT
CTCATATTGTTGGTGGGTAATGGGTTCATGGGTTTCTGAGACGAGCATGCTGCCCAGCTTATATTGAAGGTTTACTGAGG
ACCAGTCATTTTGTTTAATGGGNAAATTTGATCCATGCCATTGCAAACTCATTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis