Browse Element(s) Details


Os.28438.2.S1_a_at

Description gb:AK104080.1
DB_XREF= gi:32989289
TID=Os.28438.2
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.28438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 33kDa oxygen evolvingprotein of photosystem II (B1080D07.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A06, full insert sequence.
FL= gb:AK104080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3169011/11Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os03g187901/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31629OsAffx.2127.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629Os.5345.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.25836.1.S1_at4/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.19690.1.S1_at1/111+17636151..17652606expressed protein
LOC_Os01g31629Os.17546.2.S1_x_at1/111+17636151..17652606expressed protein
LOC_Os01g31650Os.47130.4.A1_x_at6/111+17653740..17655084retrotransposon protein, putative, unclassified
LOC_Os01g31660NANA1+17657233..17659658retrotransposon protein, putative, unclassified
LOC_Os01g31670NANA1+17662625..17664953retrotransposon protein, putative, unclassified
LOC_Os01g31680Os.1606.2.S1_a_at10/111+17668048..17673251Sec-independent protein translocase TatC containing protein, expressed
LOC_Os01g31690Os.28438.1.S1_x_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_s_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.2.S1_a_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_x_at8/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31700OsAffx.21167.1.S1_at5/111+17679943..17680260hypothetical protein
LOC_Os01g31714NANA1+17686528..17689449retrotransposon protein, putative, unclassified
LOC_Os01g31730NANA1+17690289..17695893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
GO:0009781biological_processphotosynthetic water oxidation
GO:0010207biological_processphotosystem II assembly
GO:0042549biological_processphotosystem II stabilization
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009579cellular_componentthylakoid
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0010242molecular_functionoxygen evolving activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28438.2.S1_a_at--498--9131Chr01:17676920..17676944 (25 bp)
TCCGACGGAACCATCAAGTTCGAGG
LOC_Os01g31690
Os.28438.2.S1_a_at--35--9051Chr01:17676978..17677002 (25 bp)
TGCAGCTGCCGGGAGGCGAGCGCGT
LOC_Os01g31690
Os.28438.2.S1_a_at--80--4152Chr01:17676998..17677022 (25 bp)
CGCGTGCCGTTCCTCTTCACCATCA
LOC_Os01g31690
Os.28438.2.S1_a_at--432--7191Chr01:17677300..17677324 (25 bp)
GTCGGACACAGACCTCGGCGCCAAG
LOC_Os01g31690
Os.28438.2.S1_a_at--346--9951Chr01:17677358..17677382 (25 bp)
TACGCGCAGCTCGAGTAGGGAATGA
LOC_Os01g31690
Os.28438.2.S1_a_at--380--1831Chr01:17677359..17677383 (25 bp)
ACGCGCAGCTCGAGTAGGGAATGAA
LOC_Os01g31690
Os.28438.2.S1_a_at--339--4591Chr01:17677361..17677385 (25 bp)
GCGCAGCTCGAGTAGGGAATGAACA
LOC_Os01g31690
Os.28438.2.S1_a_at--1147--5051Chr01:17677363..17677387 (25 bp)
GCAGCTCGAGTAGGGAATGAACAAA
LOC_Os01g31690
Os.28438.2.S1_a_at--632--3791Chr01:17677367..17677391 (25 bp)
CTCGAGTAGGGAATGAACAAATGTT
LOC_Os01g31690
Os.28438.2.S1_a_at--267--2191Chr01:17677383..17677407 (25 bp)
ACAAATGTTTTGTGCGTGGCCGGGT
LOC_Os01g31690
Os.28438.2.S1_a_at--950--3291Chr01:17677384..17677408 (25 bp)
CAAATGTTTTGTGCGTGGCCGGGTT
LOC_Os01g31690
Target Sequence 
TCCGACGGAACCATCAAGTTCGAGGAGAAGGACGGAATCGANTACGCCGCCGTCACCGTGCAGCTGCCGGGAGGCGAGCG
CGTGCCGTTCCTCTTCACCATCAAGAATCTGGTCGCCACCGGCAAGCCGGAGAGCTTCGGCGGGCCCTTCCTCGTGCCCA
GCTACCGTGGTTCGTCCTTCCTCGACCCAAAGGGCCGCGGTGGCTCTACCGGCTACGACAACGCTGTGGCGCTCCCCGCC
GGAGGCAGAGGAGACGAGGAGGAGCTCGCTAAGGAGAACGTCAAGAACGCCTCGTCGTCGACGGGCAACATCACGTTGAG
CGTCACCAAGAGCAAGCCAGAGACCGGCGAGGTGATTGGCGTCTTCGAGAGCGTGCAGCCGTCGGACACAGACCTCGGCG
CCAAGGTGCCCAAGGATGTCAAGATCCAAGGGGTGTGGTACGCGCAGCTCGAGTAGGGAATGAACAAATGTTTTGTGCGT
GGCCGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28438.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis