Browse Element(s) Details


Os.35596.1.S1_at

Description gb:AK066713.1
DB_XREF= gi:32976731
TID=Os.35596.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tyrosyl-tRNA synthetase (B1080D07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075A21, full insert sequence.
FL= gb:AK066713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3161011/11tyrosyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31590NANA1+17614158..17614433transposon protein, putative, unclassified
LOC_Os01g31600NANA1+17621175..17622995retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31610Os.35596.1.S1_at11/111+17628813..17630551tyrosyl-tRNA synthetase family protein, expressed
LOC_Os01g31629OsAffx.2127.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629Os.5345.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.25836.1.S1_at4/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.19690.1.S1_at1/111+17636151..17652606expressed protein
LOC_Os01g31629Os.17546.2.S1_x_at1/111+17636151..17652606expressed protein
LOC_Os01g31650Os.47130.4.A1_x_at6/111+17653740..17655084retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35596.1.S1_at--68--5431Chr01:17629992..17630016 (25 bp)
GAAGCCTGGCTATGTGCCGAACACA
LOC_Os01g31610
Os.35596.1.S1_at--898--8251Chr01:17630027..17630051 (25 bp)
GGCTTGCAGAAGAGGTCACACGTTT
LOC_Os01g31610
Os.35596.1.S1_at--70--11Chr01:17630086..17630110 (25 bp)
AAAGCCACGGAAGCCTTACGGCCTG
LOC_Os01g31610
Os.35596.1.S1_at--354--7611Chr01:17630111..17630135 (25 bp)
GGGCACAGACTCAGTTGGATTCACA
LOC_Os01g31610
Os.35596.1.S1_at--933--5031Chr01:17630152..17630176 (25 bp)
GCAGATGACGTACCATCATGCTTTT
LOC_Os01g31610
Os.35596.1.S1_at--1114--3551Chr01:17630165..17630189 (25 bp)
CATCATGCTTTTTGCCATATGGCCA
LOC_Os01g31610
Os.35596.1.S1_at--416--1191Chr01:17630190..17630214 (25 bp)
AGTTTTGAAGTCTCCCCTGGTTGAT
LOC_Os01g31610
Os.35596.1.S1_at--671--8571Chr01:17630207..17630231 (25 bp)
TGGTTGATCTAGCAGTCTCCACAGG
LOC_Os01g31610
Os.35596.1.S1_at--966--7151Chr01:17630221..17630245 (25 bp)
GTCTCCACAGGTTTGCTTGCTAGCA
LOC_Os01g31610
Os.35596.1.S1_at--620--5131Chr01:17630243..17630267 (25 bp)
GCAAATCAGCGGTTAGGCGGCTTAT
LOC_Os01g31610
Os.35596.1.S1_at--867--5571Chr01:17630349..17630373 (25 bp)
GAAAGTGCTGTTGCTATCTGCTGGA
LOC_Os01g31610
Target Sequence 
GAAGCCTGGCTATGTGCCGAACACAATTCAGAGGAGGCTTGCAGAAGAGGTCACACGTTTTGTGCATGGTGAGGAGGGAT
TGGAGGAAGCGTTGAAAGCCACGGAAGCCTTACGGCCTGGGGCACAGACTCAGTTGGATTCACAAACAATTGAGGGGATA
GCAGATGACGTACCATCATGCTTTTTGCCATATGGCCAAGTTTTGAAGTCTCCCCTGGTTGATCTAGCAGTCTCCACAGG
TTTGCTTGCTAGCAAATCAGCGGTTAGGCGGCTTATTAAGCAAGGGGGGCTATACTTAAATAACATAAGAATTGATAGCG
AGGATAAGTTGGTTGAGGAAGGTGATGTAGTTGATGGGAAAGTGCTGTTGCTATCTGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis