Browse Element(s) Details


OsAffx.7712.1.S1_at

Description tigr:9640.m02619
TID=OsAffx.7712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2725411/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27220OsAffx.19849.1.S1_x_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27220OsAffx.19849.1.S1_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27230OsAffx.10637.1.S1_s_at10/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.3.S1_s_at7/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.4.S1_s_at6/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.2.S1_at1/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27240OsAffx.32056.1.S1_x_at7/1112+15980282..15984976transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27254OsAffx.7712.1.S1_at11/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254Os.52173.1.S1_at11/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254OsAffx.10015.1.S1_s_at2/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254Os.52100.1.S1_at1/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27270Os.47463.1.S1_x_at6/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27270Os.14491.2.S1_x_at4/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27280OsAffx.30400.1.S1_x_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27280OsAffx.30400.1.S1_at11/1112+16026609..16026963hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7712.1.S1_at--208--10451Chr12:16002122..16002223 (25 bp)
TTACCTGCAGTATCCAAACACCTTT
LOC_Os12g27254
OsAffx.7712.1.S1_at--904--2471Chr12:16002106..16002130 (25 bp)
AACACCTTTGAGTCCTTGAGATACA
LOC_Os12g27254
OsAffx.7712.1.S1_at--928--6471Chr12:16002087..16002111 (25 bp)
GATACATATGCTTTGAAACACCACT
LOC_Os12g27254
OsAffx.7712.1.S1_at--914--5532Chr12:16002073..16002097 (25 bp)
GAAACACCACTTGATTATATTGCAT
LOC_Os12g27254
OsAffx.7712.1.S1_at--1101--7871Chr12:16002037..16002061 (25 bp)
GGTTTTGCACAAAATATGACCCCAT
LOC_Os12g27254
OsAffx.7712.1.S1_at--36--5531Chr12:16001665..16001689 (25 bp)
GAAAACTCTGGATCACCGTCACCGT
LOC_Os12g27254
OsAffx.7712.1.S1_at--514--4531Chr12:16001624..16001648 (25 bp)
GCCGCCGTGATTAGGGATGCCTCAA
LOC_Os12g27254
OsAffx.7712.1.S1_at--538--6351Chr12:16001609..16001633 (25 bp)
GATGCCTCAATTGTGTCAACGGGTA
LOC_Os12g27254
OsAffx.7712.1.S1_at--410--1911Chr12:16001591..16001615 (25 bp)
ACGGGTATGGCCGACATGAGTGTTT
LOC_Os12g27254
OsAffx.7712.1.S1_at--210--711Chr12:16001576..16001600 (25 bp)
ATGAGTGTTTACCATGGCTCCTCGT
LOC_Os12g27254
OsAffx.7712.1.S1_at--1016--851Chr12:16001563..16001587 (25 bp)
ATGGCTCCTCGTTTATTAGTATTCA
LOC_Os12g27254
Target Sequence 
TTACCTGCAGTATCCAAACACCTTTGAGTCCTTGAGATACATATGCTTTGAAACACCACTTGATTATATTGCATCCATTA
AGAACGGTTTTGCACAAAATATGACCCCATATTTTCTTGCAAAAATTGCAAAAACCACCCCCCGAAAACTCTGGATCACC
GTCACCGTCACCCATGACTCGCTGGCCGCCGTGATTAGGGATGCCTCAATTGTGTCAACGGGTATGGCCGACATGAGTGT
TTACCATGGCTCCTCGTTTATTAGTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis