Browse Element(s) Details


Os.52173.1.S1_at

Description gb:AK065433.1
DB_XREF= gi:32975451
TID=Os.52173.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024J06, full insert sequence.
FL= gb:AK065433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2725411/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27220OsAffx.19849.1.S1_x_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27220OsAffx.19849.1.S1_at2/1112+15967110..15970797Transferase family protein, expressed
LOC_Os12g27230OsAffx.10637.1.S1_s_at10/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.3.S1_s_at7/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.4.S1_s_at6/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27230OsAffx.10637.2.S1_at1/1112+15974998..15978683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27240OsAffx.32056.1.S1_x_at7/1112+15980282..15984976transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27254OsAffx.7712.1.S1_at11/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254Os.52173.1.S1_at11/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254OsAffx.10015.1.S1_s_at2/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254Os.52100.1.S1_at1/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27270Os.47463.1.S1_x_at6/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27270Os.14491.2.S1_x_at4/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27280OsAffx.30400.1.S1_x_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27280OsAffx.30400.1.S1_at11/1112+16026609..16026963hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52173.1.S1_at--563--1051Chr12:15996063..15996087 (25 bp)
AGGTGGCATACCGACTGTTAGTCCG
LOC_Os12g27254
Os.52173.1.S1_at--322--6791Chr12:15996047..15996071 (25 bp)
GTTAGTCCGCCAAATTTGACAAGCT
LOC_Os12g27254
Os.52173.1.S1_at--299--7351Chr12:15995995..15996019 (25 bp)
GTGAAAAGTCAACCGTCATCTCCAT
LOC_Os12g27254
Os.52173.1.S1_at--757--2831Chr12:15995892..15995916 (25 bp)
AAGTATATCTGCTTCACGTAGAGTA
LOC_Os12g27254
Os.52173.1.S1_at--578--3551Chr12:15995858..15995882 (25 bp)
CATCTTTTATTTGGTCGGTTGCTGA
LOC_Os12g27254
Os.52173.1.S1_at--512--6831Chr12:15995823..15995847 (25 bp)
GTTTCATCGGTGTTGGTTTTGTTAT
LOC_Os12g27254
Os.52173.1.S1_at--243--10771Chr12:15995805..15995829 (25 bp)
TTGTTATTCAGATGGGCTTGGGCGC
LOC_Os12g27254
Os.52173.1.S1_at--9--7131Chr12:15995759..15995783 (25 bp)
GTCTTTTCCATTTGGTGACCAGTGT
LOC_Os12g27254
Os.52173.1.S1_at--30--9391Chr12:15995697..15995721 (25 bp)
TCGATTATCGTATAGCTCGGTCATA
LOC_Os12g27254
Os.52173.1.S1_at--244--1252Chr12:15995643..15995667 (25 bp)
AGTTGTGCATTATTGTGACCTTGTA
LOC_Os12g27254
Os.52173.1.S1_at--238--9391Chr12:15995585..15995609 (25 bp)
TCGATCTGGCACACCCTTTAATAAT
LOC_Os12g27254
Target Sequence 
AGGTGGCATACCGACTGTTAGTCCGCCAAATTTGACAAGCTACCAATTCTTGTGCAAGAATGAAAAAGGTGAAAAGTCAA
CCGTCATCTCCATGTTGTTGCCACAACCTGCAATGGATAGATTCAAAAAGGAGATGGCTGCTTGGTTAATTGAATAACTA
AGAGGATAAATAAGTATATCTGCTTCACGTAGAGTAAAACCACATCATCTTTTATTTGGTCGGTTGCTGAATAAGACATA
GTTTCATCGGTGTTGGTTTTGTTATTCAGATGGGCTTGGGCGCGGATGGCATTTAATTAGTTAGGTCTTTTCCATTTGGT
GACCAGTGTGTTATATTTATGATTATGTACTTTATTTTGTGGAGGATCGATTATCGTATAGCTCGGTCATAAGTCAGTGT
ACCATTACAAAACTACATCAAGTTGTGCATTATTGTGACCTTGTAAAATGGTGTTTTATGAGATAATCAAATTGTTGTTC
GATCTGGCACACCCTTTAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis