Browse Element(s) Details


Os.50915.1.S1_at

Description gb:AK059445.1
DB_XREF= gi:32969463
TID=Os.50915.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A06, full insert sequence.
FL= gb:AK059445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2254011/11transcription factor jumonji, putative, expressed
LOC_Os09g220702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g220401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein
LOC_Os09g22540Os.50915.1.S1_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_s_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_x_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540Os.50043.1.A1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.23616.1.S1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22550NANA9+13602143..13602367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23050NANA9+13612551..13613024hypothetical protein
LOC_Os09g23060OsAffx.8676.1.S1_at2/119+13617990..13619315hypothetical protein
LOC_Os09g23070Os.46338.1.S1_at11/119+13625138..13628838Malonyl-CoA decarboxylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50915.1.S1_at--577--5131Chr09:13596345..13596369 (25 bp)
GCAAATGAGTTGTCCTGTCCTATAA
LOC_Os09g22540
Os.50915.1.S1_at--557--6891Chr09:13596440..13596464 (25 bp)
GTATCTCGACAAGCATTCTAAGGAA
LOC_Os09g22540
Os.50915.1.S1_at--1139--10292Chr09:13596465..13596489 (25 bp)
TTTCGCCATATATACTGTTCTGCAG
LOC_Os09g22540
Os.50915.1.S1_at--1141--1191Chr09:13596794..13596818 (25 bp)
AGTATTCATTCCTGCTGGGTGTCCT
LOC_Os09g22540
Os.50915.1.S1_at--192--3852Chr09:13596808..13596832 (25 bp)
CTGGGTGTCCTCATCAAGTACGGAA
LOC_Os09g22540
Os.50915.1.S1_at--775--6991Chr09:13596825..13596978 (25 bp)
GTACGGAATCTTAAGTCCTGCACCA
LOC_Os09g22540
Os.50915.1.S1_at--866--4431Chr09:13596984..13597008 (25 bp)
GCCTTGGATTTTGTATCACCCGAGA
LOC_Os09g22540
Os.50915.1.S1_at--460--6112Chr09:13597017..13597041 (25 bp)
GAGTGTCTCAGCTTAACCGAGGACT
LOC_Os09g22540
Os.50915.1.S1_at--116--6191Chr09:13597035..13597059 (25 bp)
GAGGACTTCCGAAGACTTCCTAAGA
LOC_Os09g22540
Os.50915.1.S1_at--767--7871Chr09:13600747..13600771 (25 bp)
GGTTCAAAATGGACCCAAGCCCACA
LOC_Os09g22540
Os.50915.1.S1_at--1156--2531Chr09:13600793..13600817 (25 bp)
AACTCTCAATGGGACATCTTGTTGT
LOC_Os09g22540
Target Sequence 
GCAAATGAGTTGTCCTGTCCTATAAACAGTGAGACCAACAAGGGAGGTGCTTTATGGGATATTTTTAGGAGGGAAGATGT
TCCAAAACTGAAATTGTATCTCGACAAGCATTCTAAGGAATTTCGCCATATATACTGTTCTGCAGTTCAAAAGGTATGTA
ACCCTGTACATGATGAAACATTTTATCTAACAGAAGAACACAAGAGAAAACTCAAGGAGGAGCATGGAATTGAGCCTTGG
ACATTTGTACAAAAACTTGGGGAGGCAGTATTCATTCCTGCTGGGTGTCCTCATCAAGTACGGAATCTTAAGTCCTGCAC
CAAGATTGCCTTGGATTTTGTATCACCCGAGAATGTTAAGGAGTGTCTCAGCTTAACCGAGGACTTCCGAAGACTTCCTA
AGAACCACAGGGCCAAAGAAGACAAATTAGAGNTAGGTGTGGTTCAAAATGGACCCAAGCCCACATACCCTCGAGAAACT
ATTCTAAACTCTCAATGGGACATCTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis