Browse Element(s) Details


Os.52345.1.S1_at

Description gb:AK066550.1
DB_XREF= gi:32976568
TID=Os.52345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070K21, full insert sequence.
FL= gb:AK066550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6028010/11Protein kinase domain containing protein, expressed
LOC_Os09g225001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60250OsAffx.21647.1.S1_at11/111+35170523..35172361pentatricopeptide, putative
LOC_Os01g60260Os.14790.1.S1_at10/111+35179157..35182769KH domain-containing protein, putative, expressed
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60290Os.51620.1.S1_at11/111+35212197..35215541expressed protein
LOC_Os01g60310NANA1+35217538..35218707hypothetical protein
LOC_Os01g60330OsAffx.9457.1.S1_at11/111+35226005..35228563Protein kinase domain containing protein, expressed
LOC_Os01g60340Os.31128.1.S1_x_at1/111+35229152..35233804C2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52345.1.S1_at--133--9831Chr01:35203155..35203272 (25 bp)
TAACAAGCATGAGACATCTTCACAT
LOC_Os01g60280
Os.52345.1.S1_at--97--51Chr01:35203094..35203118 (25 bp)
ATTGTCAAGATTGCCTGAACTCCTC
LOC_Os01g60280
Os.52345.1.S1_at--274--6691Chr01:35201097..35201121 (25 bp)
GTTCCATCCCTGCTGCATACGAAAA
LOC_Os01g60280
Os.52345.1.S1_at--1029--9971Chr01:35200659..35201094 (25 bp)
TACCAACACTTCTAAAGCTGAGTCT
LOC_Os01g60280
Os.52345.1.S1_at--746--2871Chr01:35200598..35200622 (25 bp)
AAGTGGCATTCCTCAATTTGGCTAT
LOC_Os01g60280
Os.52345.1.S1_at--835--2371Chr01:35200327..35200351 (25 bp)
AAACTTGCTTCAAACGTCACTACAA
LOC_Os01g60280
Os.52345.1.S1_at--582--8952Chr09:13572180..13572202 (22 bp)
TGACTTGTCACATAACTCTCTTAAT
LOC_Os09g22500
Os.52345.1.S1_at--1153--5451Chr01:35200194..35200218 (25 bp)
GAACTATTCCATCAAGCTTTTCGGG
LOC_Os01g60280
Os.52345.1.S1_at--611--7571NONE
GGGCTGCCTAATCTTCAATTCCTAT
NONE
Os.52345.1.S1_at--978--8591Chr01:35199949..35199973 (25 bp)
TGGTGCTGTTCCATCGACAATTTGG
LOC_Os01g60280
Os.52345.1.S1_at--1082--5571Chr01:35199826..35199929 (25 bp)
GAAATCGAAGCCTTGTTGTGGACTT
LOC_Os01g60280
Target Sequence 
TAACAAGCATGAGACATCTTCACATGAACAATAACTCATTAAGTGGGCAAATCCCATCTGAATTGTCAAGATTGCCTGAA
CTCCTCCATCTCCTTGTGGACAGTAACAATTTGTCTGGACCTCTTCCTCCAGAACTAGCAGAGACTCGCAGTTTACAAAT
ACTTCAGGCTGATAACAATAACTTCAGCGGAAGTTCCATCCCTGCTGCATACGAAAACATACCAACACTTCTAAAGCTGA
GTCTTAGGAATTGCAATTTGCAAGGAGGTATTCCAGATATAAGTGGCATTCCTCAATTTGGCTATTTGGATCTTAGCTGG
AACCAACTGACAGGATCTATACCAACTAATAAACTTGCTTCAAACGTCACTACAATTGACTTGTCACATAACTCTCTTAA
TGGAACTATTCCATCAAGCTTTTCGGGGCTGCCTAATCTTCAATTCCTATCGATTGAAGGAAATCACATAGATGGTGCTG
TTCCATCGACAATTTGGAGTAACATCACTTTTGTGGGAAATCGAAGCCTTGTTGTGGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis