Browse Element(s) Details


Os.24893.1.S1_a_at

Description gb:AK068585.1
DB_XREF= gi:32978602
TID=Os.24893.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative HB2 homeodomain protein (P0454H12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151P17, full insert sequence.
FL= gb:AK068585.1 gb:AK059910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6027011/11WUSCHEL-related homeobox 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60230Os.38376.2.S1_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_s_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_at9/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60250OsAffx.21647.1.S1_at11/111+35170523..35172361pentatricopeptide, putative
LOC_Os01g60260Os.14790.1.S1_at10/111+35179157..35182769KH domain-containing protein, putative, expressed
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60290Os.51620.1.S1_at11/111+35212197..35215541expressed protein
LOC_Os01g60310NANA1+35217538..35218707hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009947biological_processcentrolateral axis specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24893.1.S1_a_at--528--3371Chr01:35191837..35191861 (25 bp)
CACCACTTTGACACGGAGCATGAGC
LOC_Os01g60270
Os.24893.1.S1_a_at--290--5931Chr01:35191852..35191876 (25 bp)
GAGCATGAGCAAATCCGTCGTATGA
LOC_Os01g60270
Os.24893.1.S1_a_at--105--3051Chr01:35191863..35191887 (25 bp)
AATCCGTCGTATGATGTATGCATCC
LOC_Os01g60270
Os.24893.1.S1_a_at--913--9051Chr01:35191881..35191905 (25 bp)
TGCATCCAATGACAGTAGCTCGCGA
LOC_Os01g60270
Os.24893.1.S1_a_at--1148--9991Chr01:35191896..35191920 (25 bp)
TAGCTCGCGATCGTCAGGCAGTTTG
LOC_Os01g60270
Os.24893.1.S1_a_at--1152--1191Chr01:35191915..35191939 (25 bp)
AGTTTGGGCCAGATGTCCTTCTACG
LOC_Os01g60270
Os.24893.1.S1_a_at--64--6271Chr01:35191926..35191950 (25 bp)
GATGTCCTTCTACGACAATGTTATG
LOC_Os01g60270
Os.24893.1.S1_a_at--844--4171Chr01:35192089..35192113 (25 bp)
CCCACATGCGATCCGGTGAAAGCTT
LOC_Os01g60270
Os.24893.1.S1_a_at--1101--9271Chr01:35192100..35192124 (25 bp)
TCCGGTGAAAGCTTTGATATGTATT
LOC_Os01g60270
Os.24893.1.S1_a_at--361--8871Chr01:35192124..35192148 (25 bp)
TGATGACGCGGCAATTCTGGATTCT
LOC_Os01g60270
Os.24893.1.S1_a_at--706--8211Chr01:35192133..35192157 (25 bp)
GGCAATTCTGGATTCTGGTTACTAG
LOC_Os01g60270
Target Sequence 
CACCACTTTGACACGGAGCATGAGCAAATCCGTCGTATGATGTATGCATCCAATGACAGTAGCTCGCGATCGTCAGGCAG
TTTGGGCCAGATGTCCTTCTACGACAATGTTATGTCAAATCCAAGAATCGATCATTTCCTTGGTAAGGTGGAGAGCCCCG
GGAGCTTCCCCCACATGCGATCCGGTGAAAGCTTTGATATGTATTGATGACGCGGCAATTCTGGATTCTGGTTACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24893.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis