Browse Element(s) Details


Os.38376.1.S1_s_at

Description gb:AK069848.1
DB_XREF= gi:32979872
TID=Os.38376.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0454H12.16 (P0454H12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034N13, full insert sequence.
FL= gb:AK069848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6023011/11auxin efflux carrier family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60200Os.6496.1.S1_a_at11/111+35135032..35139051expressed protein
LOC_Os01g60210NANA1+35149827..35150159transposon protein, putative, unclassified
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified
LOC_Os01g60230Os.38376.2.S1_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_s_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_at9/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60250OsAffx.21647.1.S1_at11/111+35170523..35172361pentatricopeptide, putative
LOC_Os01g60260Os.14790.1.S1_at10/111+35179157..35182769KH domain-containing protein, putative, expressed
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38376.1.S1_s_at--887--1471Chr01:35164954..35164978 (25 bp)
AGAATCTGCTGCTATCTTGTTCTGG
LOC_Os01g60230
Os.38376.1.S1_s_at--513--431Chr01:35164967..35164991 (25 bp)
ATCTTGTTCTGGGTGCACATCTTTG
LOC_Os01g60230
Os.38376.1.S1_s_at--550--1991Chr01:35165035..35165059 (25 bp)
ACTCTTCTAAGTACGTCATACCCTG
LOC_Os01g60230
Os.38376.1.S1_s_at--40--4771Chr01:35165168..35165192 (25 bp)
GCTATACTGCACAGGAACGTCCATA
LOC_Os01g60230
Os.38376.1.S1_s_at--8--6891Chr01:35165299..35165323 (25 bp)
GTATAGATATGGTTCTCCTGCCCAG
LOC_Os01g60230
Os.38376.1.S1_s_at--312--4891Chr01:35165333..35165357 (25 bp)
GCTTAAGCGCCACTGCTATGTTAAT
LOC_Os01g60230
Os.38376.1.S1_s_at--515--9751Chr01:35165354..35165378 (25 bp)
TAATTTTGCTAATCGCTCGCTGCTA
LOC_Os01g60230
Os.38376.1.S1_s_at--467--3571Chr01:35165408..35165432 (25 bp)
CATAGCGGTATTGCCGATGCCCAGA
LOC_Os01g60230
Os.38376.1.S1_s_at--264--611Chr01:35165424..35165448 (25 bp)
ATGCCCAGATCATCAGGTCCTCATG
LOC_Os01g60230
Os.38376.1.S1_s_at--355--8911Chr01:35165447..35165471 (25 bp)
TGACCTTTAGGTCGGTTTCCTATAT
LOC_Os01g60230
Os.38376.1.S1_s_at--377--1691Chr01:35165473..35165497 (25 bp)
AGCCTCTTTCCTTTATTAATGTAGC
LOC_Os01g60230
Target Sequence 
AGAATCTGCTGCTATCTTGTTCTGGGTGCACATCTTTGCTGTGTTCTCCATGGCAGGATGGATTATTTTGTATTTGAGCT
TACTCTTCTAAGTACGTCATACCCTGATGCTATACTGCACAGGAACGTCCATAAGATCAAAATATCACCAGATATACCAG
AAAAAGATAGTACCATGACATGTACATTAGCCAGTAAACCATGGCGACAGCCTGAAGGTACGAGTTGTATCAGTATTCAG
TATAGATATGGTTCTCCTGCCCAGTGCCCAATCGCTTAAGCGCCACTGCTATGTTAATTTTGCTAATCGCTCGCTGCTAC
AAGCAACTGAGCAATGAGAAAATGAGGGCATAGCGGTATTGCCGATGCCCAGATCATCAGGTCCTCATGACCTTTAGGTC
GGTTTCCTATATAAGCCTCTTTCCTTTATTAATGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38376.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis