Browse Element(s) Details


Os.46338.1.S1_at

Description gb:AK120537.1
DB_XREF= gi:37990160
TID=Os.46338.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129C08, full insert sequence.
FL= gb:AK120537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2307011/11Malonyl-CoA decarboxylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22540Os.50915.1.S1_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_s_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_x_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540Os.50043.1.A1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.23616.1.S1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22550NANA9+13602143..13602367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23050NANA9+13612551..13613024hypothetical protein
LOC_Os09g23060OsAffx.8676.1.S1_at2/119+13617990..13619315hypothetical protein
LOC_Os09g23070Os.46338.1.S1_at11/119+13625138..13628838Malonyl-CoA decarboxylase family protein, expressed
LOC_Os09g23084Os.54551.1.S1_at11/119+13630742..13639522Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g23100OsAffx.19542.3.S1_x_at8/119+13645494..13649716retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0050080molecular_functionmalonyl-CoA decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46338.1.S1_at--932--231Chr09:13625638..13625662 (25 bp)
ATATTTGGGTACAGGGCTCGCTCAT
LOC_Os09g23070
Os.46338.1.S1_at--248--9611Chr09:13625617..13625641 (25 bp)
TCATACTTCATCTAACTTGCTCCAA
LOC_Os09g23070
Os.46338.1.S1_at--1051--10591Chr09:13625531..13625555 (25 bp)
TTCTGCCTTTGTTTTCTCGCTGAGA
LOC_Os09g23070
Os.46338.1.S1_at--1005--10311Chr09:13625519..13625543 (25 bp)
TTTCTCGCTGAGATGTTCTGCAACA
LOC_Os09g23070
Os.46338.1.S1_at--869--351Chr09:13625398..13625422 (25 bp)
ATAAGGATATCACACTTCTCCCTGG
LOC_Os09g23070
Os.46338.1.S1_at--695--7791Chr09:13625375..13625399 (25 bp)
GGTCCTTGTGGACTTGAATTCGTCA
LOC_Os09g23070
Os.46338.1.S1_at--61--751Chr09:13625332..13625356 (25 bp)
ATGTATAGCCGCGTGTACAGTGTAC
LOC_Os09g23070
Os.46338.1.S1_at--841--9471Chr09:13625306..13625330 (25 bp)
TCTGTTTCTGATTGGCCTCGCTGCA
LOC_Os09g23070
Os.46338.1.S1_at--534--3851Chr09:13625286..13625310 (25 bp)
CTGCACTGGCAGCATTGTAGCACTA
LOC_Os09g23070
Os.46338.1.S1_at--69--6831Chr09:13625244..13625268 (25 bp)
GTTTATCTTGGCCATTCATTCTCTC
LOC_Os09g23070
Os.46338.1.S1_at--234--10551Chr09:13625230..13625254 (25 bp)
TTCATTCTCTCCTGTTCTGGTAAAT
LOC_Os09g23070
Target Sequence 
ATATTTGGGTACAGGGCTCGCTCATACTTCATCTAACTTGCTCCAATATATCGAGGTATGAAAAGATTTGTGCTTGGAAA
TTGGCACGGTGGTTTTCTATTTTTCTCTTCTGCCTTTGTTTTCTCGCTGAGATGTTCTGCAACAGCCAAAGGATACATGA
GCTGAAGAACACTTTTGGAAATGAAGTTTTTCATCCAGCGAAGGATTATAAGGATATCATTGGATACGGATAATAACTTA
ATAAGGATATCACACTTCTCCCTGGTCCTTGTGGACTTGAATTCGTCATATAAATTGTTCGTGATAATGTATAGCCGCGT
GTACAGTGTACTTCTGTTTCTGATTGGCCTCGCTGCACTGGCAGCATTGTAGCACTAGGAGTAACTAGTAATTAGTTTAT
CTTGGCCATTCATTCTCTCCTGTTCTGGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis