Browse Element(s) Details


OsAffx.23616.1.S1_at

Description tigr:9629.m03929
TID=OsAffx.23616.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4111011/11hypothetical protein
LOC_Os07g228401/11Anaphase promoting complex subunit 11, putative
LOC_Os09g225401/11transcription factor jumonji, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein
LOC_Os01g41110OsAffx.23616.1.S1_at11/111+23606880..23607718hypothetical protein
LOC_Os01g41110Os.51318.1.S1_x_at1/111+23606880..23607718hypothetical protein
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0031463cellular_componentCul3-RING ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23616.1.S1_at--690--9391Chr01:23606918..23606942 (25 bp)
TCGATTGGTCGCACCCGGCACTGCG
LOC_Os01g41110
OsAffx.23616.1.S1_at--676--5091Chr01:23606935..23606959 (25 bp)
GCACTGCGCTGCTCATGCAGACTGA
LOC_Os01g41110
OsAffx.23616.1.S1_at--533--651Chr01:23606949..23606973 (25 bp)
ATGCAGACTGACCTGGCGAGCTTCG
LOC_Os01g41110
OsAffx.23616.1.S1_at--736--1551Chr01:23606967..23607197 (25 bp)
AGCTTCGGGACAAAGCCATTGGCAT
LOC_Os01g41110
OsAffx.23616.1.S1_at--219--31Chr01:23607190..23607214 (25 bp)
ATTGGCATGTGACCCGACGAGCTTG
LOC_Os01g41110
OsAffx.23616.1.S1_at--123--991Chr01:23607373..23607397 (25 bp)
AGGAGATCACCAGCGCGTGTCTGGT
LOC_Os01g41110
OsAffx.23616.1.S1_at--704--1651Chr01:23607384..23607408 (25 bp)
AGCGCGTGTCTGGTGCACCTGAAGA
LOC_Os01g41110
OsAffx.23616.1.S1_at--443--9471Chr01:23607392..23607416 (25 bp)
TCTGGTGCACCTGAAGAGCGTGAGC
LOC_Os01g41110
OsAffx.23616.1.S1_at--6--411Chr01:23607604..23607628 (25 bp)
ATCAGGATCGAATAGCCACGTCAGA
LOC_Os01g41110
OsAffx.23616.1.S1_at--750--5231Chr01:23607613..23607637 (25 bp)
GAATAGCCACGTCAGATCGAGACTG
LOC_Os01g41110
OsAffx.23616.1.S1_at--313--63922Chr11:2446480..2446499 (20 bp)
GATCGAGACTGAGTCAAATTAGCCA
NONE
Target Sequence 
TCGATTGGTCGCACCCGGCACTGCGCTGCTCATGCAGACTGACCTGGCGAGCTTCGGGACAAAGCCATTGGCATGTGACC
CGACGAGCTTGCCCAAGCTCCCGCCGAGCAAGGAGTACAACGCCAAGCTCCGCGGCAAGGAGGCCATCAGGCAAAACACG
ACAGCCATCGGAGGTAAGGGCTCCATGTCCGTCAAGCCGGGGAGGAACGAGCCGTCGAAGGCGGCGCCGGCGCAGGACGC
CATTGGAGGAGGAGATCACCAGCGCGTGTCTGGTGCACCTGAAGAGCGTGAGCCACCACTACAGCTCGCTGCGCCGCTGA
CTCTCCGTCGTGCCTGGAGAGAGGAGAGAGAGATGAATAGAGGGGAGATGGGGAGAGGAGGAGGAGGAAGAAAAGGGATG
AGAATGACATGTGGGGCCCACATTGGCCCCACCATTTTTTTAAATTTGTGTGAAACTGACATGTGGGTCCCACGAGGTTT
ATCAGGATCGAATAGCCACGTCAGATCGAGACTGAGTCAAATTAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis