Browse Element(s) Details


OsAffx.21400.2.A1_at

Description tigr:9629.m03934
TID=OsAffx.21400.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4116010/11FAD dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein
LOC_Os01g41110OsAffx.23616.1.S1_at11/111+23606880..23607718hypothetical protein
LOC_Os01g41110Os.51318.1.S1_x_at1/111+23606880..23607718hypothetical protein
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21400.2.A1_at--49--2791NONE
AAGAGGACTCGGTTCTCCTTGACAT
NONE
OsAffx.21400.2.A1_at--723--4391Chr01:23628124..23628148 (25 bp)
GCCAAGCTTCCTGATGCAATGTTCT
LOC_Os01g41160
OsAffx.21400.2.A1_at--269--5192Chr07:2945505..2945529 (25 bp)
GCAATGTTCTGCCTGAATGTCAACA
NONE
OsAffx.21400.2.A1_at--990--111Chr01:23628064..23628088 (25 bp)
ATTCTTCCGCAGGATCTGCTTCAGG
LOC_Os01g41160
OsAffx.21400.2.A1_at--282--471Chr01:23628051..23628075 (25 bp)
ATCTGCTTCAGGACAAGGTCGTCGC
LOC_Os01g41160
OsAffx.21400.2.A1_at--497--9411Chr01:23627904..23628057 (25 bp)
TCGTCGCCTTCAACAAGATGCAACT
LOC_Os01g41160
OsAffx.21400.2.A1_at--1099--8811Chr01:23627855..23627879 (25 bp)
TGATTGGGTGACTTGCCTCGATATC
LOC_Os01g41160
OsAffx.21400.2.A1_at--634--7671Chr01:23627821..23627845 (25 bp)
GGGTATTTCGCCTTGTTCGATTATC
LOC_Os01g41160
OsAffx.21400.2.A1_at--1007--9512Chr07:2945701..2945841 (25 bp)
TCTCATCCAGTTTCTGCTTGTAGAG
NONE
OsAffx.21400.2.A1_at--130--2551Chr01:23627765..23627789 (25 bp)
AACTCTCGATTTTCTCAATATCAGG
LOC_Os01g41160
OsAffx.21400.2.A1_at--229--3111Chr01:23627749..23627773 (25 bp)
AATATCAGGGCAGCCATATCTGTCA
LOC_Os01g41160
Target Sequence 
AAGAGGACTCGGTTCTCCTTGACATCTGCCAAGCTTCCTGATGCAATGTTCTGCCTGAATGTCAACAGACTTGAGCAAGA
AGATGCCATTCTTCCGCAGGATCTGCTTCAGGACAAGGTCGTCGCCTTCAACAAGATGCAACTAATCAGGAATGTGAGTA
AGAAATTTGATTGGGTGACTTGCCTCGATATCCAGGTCCAGGGGTATTTCGCCTTGTTCGATTATCTCATCCAGTTTCTG
CTTGTAGAGTTTATTGAAACTCTCGATTTTCTCAATATCAGGGCAGCCATATCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21400.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis