Browse Element(s) Details


Os.5922.1.S1_at

Description gb:AK109565.1
DB_XREF= gi:32994774
TID=Os.5922.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A03, full insert sequence.
FL= gb:AK109565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g411901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5922.1.S1_at--131--4631Chr01:23649707..23649731 (25 bp)
GCTTGAATGAGTCAGTCCGGTTCCA
LOC_Os01g41190
Os.5922.1.S1_at--234--7251NONE
GTCCGGTTCCATCTTGGTAGCAAAA
NONE
Os.5922.1.S1_at--229--6531Chr09:18271642..18271666 (25 bp)
GATTTGCGAATCTATCGACGCCACC
NONE
Os.5922.1.S1_at--1059--511Chr09:18271668..18271692 (25 bp)
ATCGACCTACGCCTGCAAATTAAAT
NONE
Os.5922.1.S1_at--507--5131Chr09:18271682..18271706 (25 bp)
GCAAATTAAATTCCGCAGCTAGCTA
NONE
Os.5922.1.S1_at--990--3971Chr09:18271972..18271996 (25 bp)
CGGGTGGCGCCAACGCTTAATATAT
NONE
Os.5922.1.S1_at--1047--10471Chr09:18272005..18272029 (25 bp)
TTACAGTGGCTGTTTCCTTGTGACT
NONE
Os.5922.1.S1_at--854--8331Chr09:18272012..18272036 (25 bp)
GGCTGTTTCCTTGTGACTTTAATTT
NONE
Os.5922.1.S1_at--793--3111Chr09:18272032..18272056 (25 bp)
AATTTGTCAGAGTTTTTGGAGGCCA
NONE
Os.5922.1.S1_at--547--10411Chr09:18272045..18272069 (25 bp)
TTTTGGAGGCCATTTCATTCCATAT
NONE
Os.5922.1.S1_at--845--10091Chr09:18272102..18272126 (25 bp)
TATGTAATTAATCACGCTTGCTTGT
NONE
Target Sequence 
GCTTGAATGAGTCAGTCCGGTTCCATCTTGGTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA
CTGGCATTGCGATTTGCGAATCTATCGACGCCACCGATCGACCTACGCCTGCAAATTAAATTCCGCAGCTAGCTAGCAAC
AACAACTCCCGACCGGCCGCGGCCACGACGCGCGCACGGACGGACGGACGACGACATGCCTCGCGCACTGATCGCCCTCG
CGTCGGCTGTCCTGCTGCTGGTGGCCGCGGTGGCGCCGCCGCTCGCCGCCGCGGACGACGGCGGCGCCGGAGTCCCGGGG
GAAGGGAAGCTGGAGAGCGCGGGGTCCGCGATTAAGTCGGCGGCCGCCAACGCGTTCGGGGTCGGCTCCGACATCGGCGG
CGTCCCGGTCAACCCGTCGCCGGGTGGCGCCAACGCTTAATATATTTACAGTATTACAGTGGCTGTTTCCTTGTGACTTT
AATTTGTCAGAGTTTTTGGAGGCCATTTCATTCCATATATACCTAATTAATTACTACCTAAATACTAGTATATGTAATTA
ATCACGCTTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis