Browse Element(s) Details


Os.35573.1.S1_at

Description gb:AK066814.1
DB_XREF= gi:32976832
TID=Os.35573.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.26 (P0451D05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082F17, full insert sequence.
FL= gb:AK066814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4124011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35573.1.S1_at--486--8471Chr01:23671657..23671681 (25 bp)
TGGCGCGGACCTTCTTCGCCATGGA
LOC_Os01g41240
Os.35573.1.S1_at--3--4151Chr01:23671699..23671723 (25 bp)
CGCTGGCGCGCATGATCTTCCTCGG
LOC_Os01g41240
Os.35573.1.S1_at--382--1291Chr01:23671897..23671921 (25 bp)
AGATGCTCCGGATACTCGACGCTGT
LOC_Os01g41240
Os.35573.1.S1_at--874--1991Chr01:23671910..23671934 (25 bp)
ACTCGACGCTGTGCTCGCCGAGGAG
LOC_Os01g41240
Os.35573.1.S1_at--814--2871Chr01:23672019..23672043 (25 bp)
AAGGGCGACATCGATGTGGCCACGT
LOC_Os01g41240
Os.35573.1.S1_at--105--4411Chr01:23672037..23672061 (25 bp)
GCCACGTAGATAGCTAGCCACTTGC
LOC_Os01g41240
Os.35573.1.S1_at--198--9991Chr01:23672051..23672075 (25 bp)
TAGCCACTTGCCACTTCCATTGTTC
LOC_Os01g41240
Os.35573.1.S1_at--58--2071Chr01:23672063..23672087 (25 bp)
ACTTCCATTGTTCCATGCTTACCGG
LOC_Os01g41240
Os.35573.1.S1_at--36--7831Chr01:23672107..23672131 (25 bp)
GGTCAACGACGGCTATAAGATTACT
LOC_Os01g41240
Os.35573.1.S1_at--567--3551Chr01:23672130..23672154 (25 bp)
CTTGATGTTCGTGTTTGGGTCGTCA
LOC_Os01g41240
Os.35573.1.S1_at--451--8631Chr01:23672145..23672169 (25 bp)
TGGGTCGTCATGTACGTGGTTCATA
LOC_Os01g41240
Target Sequence 
TGGCGCGGACCTTCTTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGC
GTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTA
CATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACG
AGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCATCGTCATG
GAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACATCGATGTGGCCACGTAGATAGCTAGCCA
CTTGCCACTTCCATTGTTCCATGCTTACCGGCCGGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATG
TTCGTGTTTGGGTCGTCATGTACGTGGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis