Browse Element(s) Details


Os.55061.1.S1_at

Description gb:AK107398.1
DB_XREF= gi:32992607
TID=Os.55061.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D07, full insert sequence.
FL= gb:AK107398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4129011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55061.1.S1_at--49--2831Chr01:23691936..23691960 (25 bp)
AAGTTGCTGCCTAGCTTCCTGAGAT
LOC_Os01g41290
Os.55061.1.S1_at--579--2691Chr01:23691978..23692204 (25 bp)
AAGCTGCACGTCAAGTCCGAGAAAT
LOC_Os01g41290
Os.55061.1.S1_at--128--3431Chr01:23692205..23692229 (25 bp)
CAGATGAACCGGTTGGCAGGCTCAA
LOC_Os01g41290
Os.55061.1.S1_at--1049--5411Chr01:23692434..23692458 (25 bp)
GAAGCCTCTGAGTTCTGTCAAGATG
LOC_Os01g41290
Os.55061.1.S1_at--945--2571Chr01:23692479..23692503 (25 bp)
AACGGTCGTTGAGGGCACAGTTCAT
LOC_Os01g41290
Os.55061.1.S1_at--1049--2731Chr01:23692508..23692532 (25 bp)
AAGAAGATTCTTGTTGCCTCCGTGA
LOC_Os01g41290
Os.55061.1.S1_at--434--3811Chr01:23692525..23692549 (25 bp)
CTCCGTGATGCGTTTGATTTTTCTA
LOC_Os01g41290
Os.55061.1.S1_at--839--6531Chr01:23692540..23692564 (25 bp)
GATTTTTCTATCGATGACCCCTTTG
LOC_Os01g41290
Os.55061.1.S1_at--165--8831Chr01:23692554..23692578 (25 bp)
TGACCCCTTTGATCGCTACTTATAG
LOC_Os01g41290
Os.55061.1.S1_at--1118--3011Chr01:23692586..23692610 (25 bp)
AATGCTGCCTGTGTTTGATCGTCAA
LOC_Os01g41290
Os.55061.1.S1_at--666--9471Chr01:23692617..23692641 (25 bp)
TCTGCATTGTGCACCCTAATTTGAT
LOC_Os01g41290
Target Sequence 
AAGTTGCTGCCTAGCTTCCTGAGATGCTTTCCCAATGTCGAGAAGCTGCACGTCAAGTCCGAGAAATCAGATGAACCGGT
TGGCAGGCTCAACCTCAAGTTCTGGCAGGAGGCTGGTCGCATAGAATGCTTGCAATCGTGCATCAAGTATGTGGTTTTCC
ATGGGTACCGAGGGGATCGTAGCGAGCTCACCTTCCTGAAGTACATCCTGGGAAGTGGACAGGTGCTGCAGGAGATGGTG
ATCGTGGTCGCGAATGGAATGTTCTCCACACAGGATGAGGTGGGCGAGAAACTGGTGAAGCCTCTGAGTTCTGTCAAGAT
GGCCAGTGGAGACTGTAATATAACGGTCGTTGAGGGCACAGTTCATGATGAAGAAGATTCTTGTTGCCTCCGTGATGCGT
TTGATTTTTCTATCGATGACCCCTTTGATCGCTACTTATAGGGAACTCAATGCTGCCTGTGTTTGATCGTCAAGTGGTTT
CTGCATTGTGCACCCTAATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis