Browse Element(s) Details


Os.52766.1.S1_at

Description gb:AK069151.1
DB_XREF= gi:32979175
TID=Os.52766.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007D17, full insert sequence.
FL= gb:AK069151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4131011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52766.1.S1_at--926--5531Chr01:23704661..23704808 (25 bp)
GAAACACTGCACATCGAGTCTGATA
LOC_Os01g41310
Os.52766.1.S1_at--358--1311Chr01:23704810..23704834 (25 bp)
AGATGATGAGTTCACTGGCCAGCCC
LOC_Os01g41310
Os.52766.1.S1_at--425--6151Chr01:23704853..23704877 (25 bp)
GAGGTCTGTCCTGTTGAATGTATCA
LOC_Os01g41310
Os.52766.1.S1_at--836--6531Chr01:23704943..23704967 (25 bp)
GATTTCATCGCCAGGACAGCACAGG
LOC_Os01g41310
Os.52766.1.S1_at--672--971Chr01:23704965..23704989 (25 bp)
AGGAGCTTCAGGCTTTACTGCTTAT
LOC_Os01g41310
Os.52766.1.S1_at--956--10851Chr01:23705132..23705156 (25 bp)
TTGGATCTTTCTGTGGATGACCCTT
LOC_Os01g41310
Os.52766.1.S1_at--899--5811Chr01:23705150..23705174 (25 bp)
GACCCTTTCCTCTGATGAACTTGAA
LOC_Os01g41310
Os.52766.1.S1_at--240--91Chr01:23705193..23705217 (25 bp)
ATTCCTTGATCTTTGCCTTATTATG
LOC_Os01g41310
Os.52766.1.S1_at--1063--6771Chr01:23705225..23705249 (25 bp)
GTTACCCTTATGTTGCAGTGTTGCC
LOC_Os01g41310
Os.52766.1.S1_at--234--10051Chr01:23705250..23705274 (25 bp)
TAGTTAGGCACTCTCTTGTTGTTAA
LOC_Os01g41310
Os.52766.1.S1_at--509--8791Chr01:23705269..23705293 (25 bp)
TGTTAATGTGCTTCCTCTGAGATAG
LOC_Os01g41310
Target Sequence 
GAAACACTGCACATCGAGTCTGATATAGATGATGAGTTCACTGGCCAGCCCCATGCCAAGTTCTGGCAGGAGGTCTGTCC
TGTTGAATGTATCAATTCACACGTCAAGAAGATTGTCTTTCATGATTTTCATGGGGACAAATGCGAGCTTGAATTCATCG
ATTTCATCGCCAGGACAGCACAGGAGCTTCAGGCTTTACTGCTTATGTTGACCAGTAAAACGTATGGTCCTGTTGTTGAT
GTGGATGAAGTGAACAGCCAATTGGGCGTCCTGTCATTTGCATCTGAAGAGTGCATAACGTCGCTGCTTGGGCCTAAAGT
GCAGATGGTTCACATATTCCACAGATCATTGGATCTTTCTGTGGATGACCCTTTCCTCTGATGAACTTGAATGCGCTAGC
TGGATAAATATTCCTTGATCTTTGCCTTATTATGGAAACAGTTACCCTTATGTTGCAGTGTTGCCTAGTTAGGCACTCTC
TTGTTGTTAATGTGCTTCCTCTGAGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis