Browse Element(s) Details


OsAffx.11423.1.S1_at

Description tigr:9629.m03952
TID=OsAffx.11423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4134011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein
LOC_Os01g41370Os.5732.1.S1_at11/111+23735471..23738019expressed protein
LOC_Os01g41380OsAffx.11424.1.S1_at11/111+23742330..23745070NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11423.1.S1_at--878--3511Chr01:23720644..23720668 (25 bp)
CATGAAAATCTTGGTCCTCTGCATT
LOC_Os01g41340
OsAffx.11423.1.S1_at--1064--2891Chr01:23720610..23720634 (25 bp)
AAGGTGCTCGACTTGCTGGACGCTC
LOC_Os01g41340
OsAffx.11423.1.S1_at--36--10771Chr01:23720579..23720603 (25 bp)
TTGAGCGTCTCATCATCTGGAGGCC
LOC_Os01g41340
OsAffx.11423.1.S1_at--1066--5871Chr01:23720495..23720519 (25 bp)
GAGCGATCGGGTATCTTGACACCAT
LOC_Os01g41340
OsAffx.11423.1.S1_at--626--5631Chr01:23720478..23720502 (25 bp)
GACACCATTCTGCATGTGGTCCAGA
LOC_Os01g41340
OsAffx.11423.1.S1_at--723--5351Chr01:23720276..23720300 (25 bp)
GAAGATCAGCCCGTCTTTAACGATC
LOC_Os01g41340
OsAffx.11423.1.S1_at--313--10471Chr01:23720260..23720284 (25 bp)
TTAACGATCCCTAGTGTCGAGACCC
LOC_Os01g41340
OsAffx.11423.1.S1_at--1130--5971Chr01:23720242..23720266 (25 bp)
GAGACCCTGGCTATAAAACTATCGT
LOC_Os01g41340
OsAffx.11423.1.S1_at--1090--3091Chr01:23720197..23720221 (25 bp)
AATAGGCTTTTGTCCTTTCTGAAGA
LOC_Os01g41340
OsAffx.11423.1.S1_at--793--551Chr01:23720011..23720035 (25 bp)
ATCCTCCTTGTACATCATCTTGTGT
LOC_Os01g41340
OsAffx.11423.1.S1_at--515--10591Chr01:23719879..23719903 (25 bp)
TTCTCGGTGATCTTCCATTCATTAG
LOC_Os01g41340
Target Sequence 
CATGAAAATCTTGGTCCTCTGCATTTTCCACACCAAGGTGCTCGACTTGCTGGACGCTCCGTCCCTTGAGCGTCTCATCA
TCTGGAGGCCGATGTTAGTGATGAGTCTTTACATGTTCATGATCAAGATCACCCGCGCACCCATCCTTCGAGCGATCGGG
TATCTTGACACCATTCTGCATGTGGTCCAGATCGGAGGAACTATCATAGAGGCTGGGACGAAGATCAGCCCGTCTTTAAC
GATCCCTAGTGTCGAGACCCTGGCTATAAAACTATCGTTTGGATCAAAAGAGCAAGAGAATAGGCTTTTGTCCTTTCTGA
AGATATTTCCAAATGTCAAGACTCTATATGTGATGTCACATCCTCCTTGTACATCATCTTGTGTTTTCCATGATGAGCGT
GATGTAGATTTCTGGATGAAGAACCTTGGATCCATTTTATGTGTCCATTCACAACTTACAAAGTTCACGTTCTATAATCT
ACATGGAGTGGTTCTCGGTGATCTTCCATTCATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis