Browse Element(s) Details


OsAffx.11424.1.S1_at

Description tigr:9629.m03956
TID=OsAffx.11424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4138011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein
LOC_Os01g41370Os.5732.1.S1_at11/111+23735471..23738019expressed protein
LOC_Os01g41380OsAffx.11424.1.S1_at11/111+23742330..23745070NA
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein
LOC_Os01g41400OsAffx.11426.1.S1_at11/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41400OsAffx.27081.1.S1_x_at2/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41410OsAffx.23620.1.S1_at11/111+23769009..23769323hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11424.1.S1_at--956--5931Chr01:23744527..23744551 (25 bp)
GAGCAAGCTGCTCTGAGTCTCAGGC
LOC_Os01g41380
OsAffx.11424.1.S1_at--520--3771Chr01:23744517..23744541 (25 bp)
CTCTGAGTCTCAGGCACTACAAAGT
LOC_Os01g41380
OsAffx.11424.1.S1_at--1104--1991Chr01:23744502..23744526 (25 bp)
ACTACAAAGTGCCAATCAGTTTTCT
LOC_Os01g41380
OsAffx.11424.1.S1_at--481--4391Chr01:23744465..23744516 (25 bp)
GCCAATCAGTTTTCTATATATTCAG
LOC_Os01g41380
OsAffx.11424.1.S1_at--64--231Chr01:23744450..23744472 (23 bp)
ATATTCAGCTGATACAAGTACAGTC
LOC_Os01g41380
OsAffx.11424.1.S1_at--308--2211Chr01:23744084..23744459 (25 bp)
ACAAGTACAGTCAAATTTTGTTCAT
LOC_Os01g41380
OsAffx.11424.1.S1_at--650--3271Chr01:23744044..23744068 (25 bp)
CAAAATATGGCAAACCGTACTGATT
LOC_Os01g41380
OsAffx.11424.1.S1_at--699--8491Chr01:23744037..23744061 (25 bp)
TGGCAAACCGTACTGATTTCAAGGC
LOC_Os01g41380
OsAffx.11424.1.S1_at--699--6511Chr01:23744023..23744047 (25 bp)
GATTTCAAGGCGAAACTACCTGACT
LOC_Os01g41380
OsAffx.11424.1.S1_at--117--7671Chr01:23744015..23744039 (25 bp)
GGCGAAACTACCTGACTTAATGTCT
LOC_Os01g41380
OsAffx.11424.1.S1_at--508--2031Chr01:23744012..23744033 (22 bp)
ACTACCTGACTTAATGTCTATGCTA
LOC_Os01g41380
Target Sequence 
GAGCAAGCTGCTCTGAGTCTCAGGCACTACAAAGTGCCAATCAGTTTTCTATATATTCAGCTGATACAAGTACAGTCAAA
TTTTGTTCATTTTTTTAAATCATTCCAAAATATGGCAAACCGTACTGATTTCAAGGCGAAACTACCTGACTTAATGTCTA
TGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis