Browse Element(s) Details


Os.5732.1.S1_at

Description gb:AK107371.1
DB_XREF= gi:32992580
TID=Os.5732.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B04, full insert sequence.
FL= gb:AK107371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4137011/11expressed protein
LOC_Os01g413506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein
LOC_Os01g41370Os.5732.1.S1_at11/111+23735471..23738019expressed protein
LOC_Os01g41380OsAffx.11424.1.S1_at11/111+23742330..23745070NA
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5732.1.S1_at--87--592Chr01:23737424..23737446 (23 bp)
ATGCCTATCGAAGATCCTCAGTCTA
LOC_Os01g41370
Os.5732.1.S1_at--986--9532Chr01:23737443..23737467 (25 bp)
TCTACCCAGCTTGATGACTTTGAGT
LOC_Os01g41370
Os.5732.1.S1_at--154--5312Chr01:23737514..23737538 (25 bp)
GAAGGTAGTGTTCCATGGGTTCTCC
LOC_Os01g41370
Os.5732.1.S1_at--1109--1331Chr01:23737615..23737639 (25 bp)
AGAGTCGACATGGTGCTGCCCCAGA
LOC_Os01g41370
Os.5732.1.S1_at--890--3492Chr01:23737667..23737691 (25 bp)
CATGGTAGCTTCTCTGAACATCGGC
LOC_Os01g41370
Os.5732.1.S1_at--961--8432Chr01:23737689..23737713 (25 bp)
GGCCTTGGCCGTACAGAGATCATAT
LOC_Os01g41370
Os.5732.1.S1_at--543--571Chr01:23737726..23737750 (25 bp)
ATCCAACCTGGTGCTATAGGGCGGC
LOC_Os01g41370
Os.5732.1.S1_at--1110--432Chr01:23737756..23737780 (25 bp)
ATCTTTCTCGTGCTGATCCTTTTGA
LOC_Os01g41370
Os.5732.1.S1_at--460--6371Chr01:23737770..23737794 (25 bp)
GATCCTTTTGATTGCTGCCGTTGAA
LOC_Os01g41370
Os.5732.1.S1_at--85--4891Chr01:23737810..23737834 (25 bp)
GCTTTGATCATCTTCGTACTATATA
LOC_Os01g41370
Os.5732.1.S1_at--352--7351Chr01:23737988..23738012 (25 bp)
GTGCAACGCTTTGTACTGCTGGATT
LOC_Os01g41370
Target Sequence 
ATGCCTATCGAAGATCCTCAGTCTACCCAGCTTGATGACTTTGAGTTCTGGGAGGAGATCAATTCAGTTGAATGTGTCAG
ATCCAGCATCAAGAAGGTAGTGTTCCATGGGTTCTCCTGGAAGAATTCTGAGATAGCGTTCATCAATTCCATCGCCGAAG
GAGGACTGGTGCTCGAGAAGATCTGTATCTTCCAGAGTCGACATGGTGCTGCCCCAGATGATGATGAACTGAATGCTAAG
CTGAGCATGGTAGCTTCTCTGAACATCGGCCTTGGCCGTACAGAGATCATATTTTCAGGTGAAGATCCAACCTGGTGCTA
TAGGGCGGCGGCTGATCTTTCTCGTGCTGATCCTTTTGATTGCTGCCGTTGAAGATCGATGTCTCTGTGCTTTGATCATC
TTCGTACTATATATACATTTTGTGCTTCAGAATGTCACACAGTCTGCAAAGGTTGCTCAAGGTAGTTATATAGCGAATAA
ATATGTGACATCTGGAAATTTTATCATGTGTGTGTACCAGTTAAATTCTATCCTGTGGTATTAATAAATGGTACTGGCGA
GGCAGTGTGCAACGCTTTGTACTGCTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis