Browse Element(s) Details


OsAffx.2204.1.S1_at

Description tigr:9629.m03951
TID=OsAffx.2204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4133011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein
LOC_Os01g41370Os.5732.1.S1_at11/111+23735471..23738019expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2204.1.S1_at--288--1891Chr01:23715006..23715030 (25 bp)
ACGATGCCGGTGTTAGGCAACTGGA
LOC_Os01g41330
OsAffx.2204.1.S1_at--45--7411Chr01:23714997..23715021 (25 bp)
GTGTTAGGCAACTGGACGCCACCAA
LOC_Os01g41330
OsAffx.2204.1.S1_at--1020--8511Chr01:23714985..23715009 (25 bp)
TGGACGCCACCAAGTTAGACCTGCT
LOC_Os01g41330
OsAffx.2204.1.S1_at--335--1211Chr01:23714973..23714997 (25 bp)
AGTTAGACCTGCTTCAGGGAATTGC
LOC_Os01g41330
OsAffx.2204.1.S1_at--576--2891Chr01:23714880..23714904 (25 bp)
AAGGTGCTTGTCAGCAAAAGCCCTA
LOC_Os01g41330
OsAffx.2204.1.S1_at--634--3271Chr01:23714866..23714890 (25 bp)
CAAAAGCCCTAAACCAGCTCCTAAG
LOC_Os01g41330
OsAffx.2204.1.S1_at--828--9251Chr01:23714826..23714872 (25 bp)
TCCTAAGCGCGTCATCGTTAAACAG
LOC_Os01g41330
OsAffx.2204.1.S1_at--804--3431Chr01:23714804..23714828 (25 bp)
CAGATGATGCTAAAGGGTCCAGGGT
LOC_Os01g41330
OsAffx.2204.1.S1_at--714--8191Chr01:23714779..23714803 (25 bp)
GGAAGAACAGGATGCTGGCGACCAT
LOC_Os01g41330
OsAffx.2204.1.S1_at--423--6351Chr01:23714769..23714793 (25 bp)
GATGCTGGCGACCATGGCTTTCATT
LOC_Os01g41330
OsAffx.2204.1.S1_at--1134--4331Chr01:23714758..23714782 (25 bp)
CCATGGCTTTCATTCAAGAGCTCGT
LOC_Os01g41330
Target Sequence 
ACGATGCCGGTGTTAGGCAACTGGACGCCACCAAGTTAGACCTGCTTCAGGGAATTGCAATGGAAGAGATCAGCAAGGTT
GAGGAAGGCGAGCTCCTCAAGGTGCTTGTCAGCAAAAGCCCTAAACCAGCTCCTAAGCGCGTCATCGTTAAACAGATGAT
GCTAAAGGGTCCAGGGTGGAAGAACAGGATGCTGGCGACCATGGCTTTCATTCAAGAGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis