Browse Element(s) Details


OsAffx.2205.1.S1_at

Description tigr:9629.m03954
TID=OsAffx.2205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4136011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein
LOC_Os01g41370Os.5732.1.S1_at11/111+23735471..23738019expressed protein
LOC_Os01g41380OsAffx.11424.1.S1_at11/111+23742330..23745070NA
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2205.1.S1_at--866--6451Chr01:23730065..23730089 (25 bp)
GATCAAGATCTGCTCTATGCCTAAG
LOC_Os01g41360
OsAffx.2205.1.S1_at--984--8951Chr01:23730304..23730328 (25 bp)
TGACATGAAGGCTAGCGCTGCTACG
LOC_Os01g41360
OsAffx.2205.1.S1_at--1055--1911Chr01:23730326..23730350 (25 bp)
ACGGTTGTTCCTAGTGTCGAGGTCT
LOC_Os01g41360
OsAffx.2205.1.S1_at--1153--5671Chr01:23730358..23730382 (25 bp)
GACTATCCGTTTTGGTGTTCACGAG
LOC_Os01g41360
OsAffx.2205.1.S1_at--586--9231Chr01:23730405..23730429 (25 bp)
TCCTCAAGTGTTTCCCTAGCGTAAA
LOC_Os01g41360
OsAffx.2205.1.S1_at--440--7971Chr01:23730614..23730638 (25 bp)
GGATCCATCCAATGTGTTCGGTCAA
LOC_Os01g41360
OsAffx.2205.1.S1_at--633--8031Chr01:23730676..23730700 (25 bp)
GGAGTGTGAACTTGCATTCCTCTCT
LOC_Os01g41360
OsAffx.2205.1.S1_at--1040--3591Chr01:23730690..23730714 (25 bp)
CATTCCTCTCTTTCATTGCACAAAA
LOC_Os01g41360
OsAffx.2205.1.S1_at--997--6532Chr01:23730733..23730757 (25 bp)
GATTTACATCATCCCTTCCAAGAAG
LOC_Os01g41360
OsAffx.2205.1.S1_at--106--2971Chr01:23730880..23730904 (25 bp)
AATGGCATCAGATCTCTCTCTTTAT
LOC_Os01g41360
OsAffx.2205.1.S1_at--828--1791Chr01:23730906..23730930 (25 bp)
ACCCTTTTGGTTATATCGTGTCAGC
LOC_Os01g41360
Target Sequence 
GATCAAGATCTGCTCTATGCCTAAGCTCCAGAATGACATGAAGGCTAGCGCTGCTACGGTTGTTCCTAGTGTCGAGGTCT
TGGCAATGACTATCCGTTTTGGTGTTCACGAGGAAGAGCGGATGGTGCCTTGCTTCCTCAAGTGTTTCCCTAGCGTAAAA
ATATTGCATGTTAAGTCTATTGCACGTACTCAGACTACCAATGAGGTTAACTTGGAGTTCTGGAAAGATGTTGGATCCAT
CCAATGTGTTCGGTCAATCATCAAGAGGGTGATATTTGATGACTTTAGTGGAGAGGAGTGTGAACTTGCATTCCTCTCTT
TCATTGCACAAAATGCAAATCAGCTGGAAGAGATTTACATCATCCCTTCCAAGAAGGATCTTTCTGCAGGGAGTTCTCTG
GGGAATGTCATAAATCACTTCATGTCTTCAATATTATGGGCTTCTGCATATTGCAGGGTACAAGTTTGTGCCAGTGCAAA
AAATGCTTGGAACTACCAAATGGCATCAGATCTCTCTCTTTATGACCCTTTTGGTTATATCGTGTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis