Browse Element(s) Details


OsAffx.23619.1.S1_at

Description tigr:9629.m03950
TID=OsAffx.23619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4132011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed
LOC_Os01g41350Os.5732.1.S1_at6/111+23724369..23727589hypothetical protein
LOC_Os01g41360OsAffx.2205.1.S1_at11/111+23729290..23730970expressed protein
LOC_Os01g41370Os.5732.1.S1_at11/111+23735471..23738019expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23619.1.S1_at--602--6251Chr01:23711482..23711506 (25 bp)
GATGGGAAGCAGGAGACGATTTCAA
LOC_Os01g41320
OsAffx.23619.1.S1_at--207--8031Chr01:23711442..23711466 (25 bp)
GGAGGGCAGATTTGGTCCTGACCAC
LOC_Os01g41320
OsAffx.23619.1.S1_at--913--7791Chr01:23711429..23711453 (25 bp)
GGTCCTGACCACCATTAGCAGAGGT
LOC_Os01g41320
OsAffx.23619.1.S1_at--134--6151Chr01:23711409..23711433 (25 bp)
GAGGTGTTGTCAGTGGCAGCGGTGC
LOC_Os01g41320
OsAffx.23619.1.S1_at--693--7731Chr01:23711325..23711349 (25 bp)
GGTGGTTTGCATGGACACAATTTAG
LOC_Os01g41320
OsAffx.23619.1.S1_at--197--5631Chr01:23711312..23711336 (25 bp)
GACACAATTTAGCAGCGGGCACAAT
LOC_Os01g41320
OsAffx.23619.1.S1_at--500--10391Chr01:23711275..23711299 (25 bp)
TTTTGTGACATGATCCTTAGGGCCC
LOC_Os01g41320
OsAffx.23619.1.S1_at--1040--2091Chr01:23711268..23711292 (25 bp)
ACATGATCCTTAGGGCCCTATATCC
LOC_Os01g41320
OsAffx.23619.1.S1_at--141--4311Chr01:23711252..23711276 (25 bp)
CCTATATCCTCTACGTGCTATTGAA
LOC_Os01g41320
OsAffx.23619.1.S1_at--570--9251Chr01:23711246..23711270 (25 bp)
TCCTCTACGTGCTATTGAAGGGAGA
LOC_Os01g41320
OsAffx.23619.1.S1_at--1066--11Chr01:23711213..23711237 (25 bp)
ATTGGGTTTGATATGGGCTAGCTGC
LOC_Os01g41320
Target Sequence 
GATGGGAAGCAGGAGACGATTTCAAAGAGGAGATTGTTGGGGAGGGCAGATTTGGTCCTGACCACCATTAGCAGAGGTGT
TGTCAGTGGCAGCGGTGCGCCGCTGACCAATGGTGGGGAGGACGGAGTTTGTGGGCAAGGGAAAGGAGGGAGAACATGGT
GGTTTGCATGGACACAATTTAGCAGCGGGCACAATGTGGGGCAGGGATTTTGTGACATGATCCTTAGGGCCCTATATCCT
CTACGTGCTATTGAAGGGAGAAATGTTGAATTGGGTTTGATATGGGCTAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis