Browse Element(s) Details


Os.33421.1.S1_at

Description gb:AK100625.1
DB_XREF= gi:32985834
TID=Os.33421.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (P0451D05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108J06, full insert sequence.
FL= gb:AK100625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4127011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33421.1.S1_at--240--5171Chr01:23686208..23686232 (25 bp)
GCAAGAGCTACTTTCGATCGTCGTG
LOC_Os01g41270
Os.33421.1.S1_at--1025--6391Chr01:23686223..23686247 (25 bp)
GATCGTCGTGTCATGTATGCTCACA
LOC_Os01g41270
Os.33421.1.S1_at--718--7491Chr01:23686322..23686346 (25 bp)
GTGGTCCAATGGTTCATCTTTGATC
LOC_Os01g41270
Os.33421.1.S1_at--78--871Chr01:23686361..23686385 (25 bp)
ATGGCTGTGTGCTGTGCATGGAATC
LOC_Os01g41270
Os.33421.1.S1_at--320--7831Chr01:23686450..23686474 (25 bp)
GGTCACTTGGATTGGTTGTCCACAT
LOC_Os01g41270
Os.33421.1.S1_at--742--2071Chr01:23686471..23686495 (25 bp)
ACATTGGACTATCAGGCTGCCCTGG
LOC_Os01g41270
Os.33421.1.S1_at--238--3831Chr01:23686487..23686511 (25 bp)
CTGCCCTGGTGTTCGTGAAGTTGTA
LOC_Os01g41270
Os.33421.1.S1_at--1117--7571Chr01:23686538..23686562 (25 bp)
GGGCTCCTGAGCAATTTGGCTGGAT
LOC_Os01g41270
Os.33421.1.S1_at--498--5371Chr01:23686669..23686693 (25 bp)
GAAGACTTATATGGCACTTGGTAAC
LOC_Os01g41270
Os.33421.1.S1_at--736--291Chr01:23686706..23686730 (25 bp)
ATAGACGCTCAGAAGCTTCCTTTGC
LOC_Os01g41270
Os.33421.1.S1_at--896--3631Chr01:23686721..23686745 (25 bp)
CTTCCTTTGCTCATCTGTATCTAAA
LOC_Os01g41270
Target Sequence 
GCAAGAGCTACTTTCGATCGTCGTGTCATGTATGCTCACAAACTGAATTGAAGCATTGTTGATGCAACTTTGGTTATCTG
CAAGGTTTAACTAGCTGTTTGCTGCTATAGATGTGTGGTCCAATGGTTCATCTTTGATCAGAGTGCATTGTGTATGGCTG
TGTGCTGTGCATGGAATCATATTGTCATAGCTGTTAACATGGTACAAATTACTCCTAGCATGTGAATAGAAACCATGTGT
GTGGTCACTTGGATTGGTTGTCCACATTGGACTATCAGGCTGCCCTGGTGTTCGTGAAGTTGTAACCAAACGTAGGCACA
AGCAGCTGCAGGGCTCCTGAGCAATTTGGCTGGATTATCTGATAGCAGATCAGGTTTTCTCAATGTTTTGTTTCCGGGGT
GACATGTGCATATATCACTTTTGGTTCCGGGGTGATAGCAGAGCAGGATGCACACAATCATGAAGACTTATATGGCACTT
GGTAACAAATGTACAATAATAGACGCTCAGAAGCTTCCTTTGCTCATCTGTATCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis