Browse Element(s) Details


Os.19344.1.S1_at

Description gb:AK068184.1
DB_XREF= gi:32978202
TID=Os.19344.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.23 (P0451D05.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013133H08, full insert sequence.
FL= gb:AK068184.1 gb:AK069334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4122010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19344.1.S1_at--322--4391Chr01:23660407..23660431 (25 bp)
GCCAAAGCCGACTCTTAGTACAAAG
LOC_Os01g41220
Os.19344.1.S1_at--133--2311Chr01:23663742..23663764 (23 bp)
AAAGGTCCTGGTGTCTATTCCTTGA
LOC_Os01g41220
Os.19344.1.S1_at--992--10091Chr01:23663785..23663809 (25 bp)
TAGGCTTCAGGCTTTCAGTGTTCTC
LOC_Os01g41220
Os.19344.1.S1_at--941--10531Chr01:23663798..23663822 (25 bp)
TTCAGTGTTCTCTGTTTCTTCGCAC
LOC_Os01g41220
Os.19344.1.S1_at--764--6831Chr01:23663811..23663835 (25 bp)
GTTTCTTCGCACCTGTCTGTAATTA
LOC_Os01g41220
Os.19344.1.S1_at--1004--1411Chr01:23663899..23663923 (25 bp)
AGAACAATGCGTACTGTAGCTCTTG
LOC_Os01g41220
Os.19344.1.S1_at--2--6971Chr01:23663914..23663938 (25 bp)
GTAGCTCTTGTATCTATACCTTCTA
LOC_Os01g41220
Os.19344.1.S1_at--969--11Chr01:23663952..23663976 (25 bp)
ATTGGTACCCACTAGTTGTGTTGGT
LOC_Os01g41220
Os.19344.1.S1_at--163--6951Chr01:23663975..23663999 (25 bp)
GTAGTTGTTACCCATGTCCATGTAT
LOC_Os01g41220
Os.19344.1.S1_at--429--3511Chr01:23663993..23664017 (25 bp)
CATGTATCGTCGTTTCAGTCCGAAA
LOC_Os01g41220
Os.19344.1.S1_at--611--10191Chr01:23664036..23664060 (25 bp)
TATATGTTGCCTCAGACACGACCAG
NONE
Target Sequence 
GCCAAAGCCGACTCTTAGTACAAAGGTCCTGGTGTCTATTCCTTGATATGGCATCATGAAGCGGCTTAGGCTTCAGGCTT
TCAGTGTTCTCTGTTTCTTCGCACCTGTCTGTAATTATTCGTGTATAAGGCTGAAATGCTGAATTGTTCAGCCAGTCGCC
CCACGCAAACAAAGTGGAACAGAACAATGCGTACTGTAGCTCTTGTATCTATACCTTCTATATAGTTGGTATAATTGGTA
CCCACTAGTTGTGTTGGTAGTTGTTACCCATGTCCATGTATCGTCGTTTCAGTCCGAAAGACTCGGGGCGCCNAATATAT
ATGTTGCCTCAGACACGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis