Browse Element(s) Details


Os.34467.1.S1_at

Description gb:AK071288.1
DB_XREF= gi:32981311
TID=Os.34467.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Mutator-like transposase (P0451D05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087J07, full insert sequence.
FL= gb:AK071288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4121011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34467.1.S1_at--355--6491Chr01:23657945..23657969 (25 bp)
GATACGCAAGCCAGGTGCTGCTCTT
LOC_Os01g41210
Os.34467.1.S1_at--620--9111Chr01:23657960..23657984 (25 bp)
TGCTGCTCTTGTCGTCGGTGGCAAA
LOC_Os01g41210
Os.34467.1.S1_at--723--271Chr01:23657986..23658010 (25 bp)
ATATGGCATTCCATGTGCACATGCT
LOC_Os01g41210
Os.34467.1.S1_at--777--5111Chr01:23658002..23658026 (25 bp)
GCACATGCTGTTGCTGCACTACTTT
LOC_Os01g41210
Os.34467.1.S1_at--715--5111Chr01:23658017..23658041 (25 bp)
GCACTACTTTCCTGTGGTGAAGATC
LOC_Os01g41210
Os.34467.1.S1_at--257--10011Chr01:23658121..23658145 (25 bp)
TAGAAGCCAATGGAACCTCCCGTTT
LOC_Os01g41210
Os.34467.1.S1_at--1014--4451Chr01:23658208..23658232 (25 bp)
GCCTCCTGGTCGTCCCAAAATGAAG
LOC_Os01g41210
Os.34467.1.S1_at--1062--5251Chr01:23658267..23658291 (25 bp)
GAATCGTTCAATGTGGCCGATGTCA
LOC_Os01g41210
Os.34467.1.S1_at--572--6811Chr01:23658423..23658447 (25 bp)
GTTTTATGCACACACAGAGGTTCTA
LOC_Os01g41210
Os.34467.1.S1_at--682--8191Chr01:23658448..23658472 (25 bp)
GGAATCCTTTTAGTTTCACATCTTG
LOC_Os01g41210
Os.34467.1.S1_at--165--6811Chr01:23658472..23658496 (25 bp)
GTTTTTTCTGTTGGCCAAAAGCTGA
LOC_Os01g41210
Target Sequence 
GATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATATGGCATTCCATGTGCACATGCTGTTGCTGCACTACT
TTCCTGTGGTGAAGATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCCAGCCAA
TCTNTTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAGGTGCAGGAAGCAAAGCATATGCGGTT
CTTCGCCCGCNCANGATCCGGAGGCCTCCTGGTCGTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAA
ACGAATCGTTCAATGTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGACATTAGATTA
TTGCTATCATATTGTTTATGTATGAATTAGTATTGAGTAGTTGTTTTATTGGCAACTAATTCAGATTAGATATTTACTGT
TTTATGCACACACAGAGGTTCTAGGAATCCTTTTAGTTTCACATCTTGTTTTTTCTGTTGGCCAAAAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis