Browse Element(s) Details


Os.10535.1.S1_at

Description gb:AU077902
DB_XREF= gi:5667642
DB_XREF=AU077902
CLONE=S3813_12Z
TID=Os.10535.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.20 (P0451D05.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4120011/11copper-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10535.1.S1_at--1054--4451Chr01:23651413..23651437 (25 bp)
GCCTGCTGAGGAGCCACTTGGAACA
LOC_Os01g41200
Os.10535.1.S1_at--114--2071Chr01:23651428..23651452 (25 bp)
ACTTGGAACAGGTTGTGCCGGTCAC
LOC_Os01g41200
Os.10535.1.S1_at--957--9171Chr01:23651443..23651467 (25 bp)
TGCCGGTCACTGATCTTGAAGACGA
LOC_Os01g41200
Os.10535.1.S1_at--248--5371Chr01:23651460..23651484 (25 bp)
GAAGACGAACCGAACGCATCATCAT
LOC_Os01g41200
Os.10535.1.S1_at--636--3851Chr01:23651680..23651704 (25 bp)
CTGAAGGTGTCTATGCACTGCCATT
LOC_Os01g41200
Os.10535.1.S1_at--414--751Chr01:23651900..23651924 (25 bp)
ATGTCAGCCCCATGGAAGTCCTGGA
LOC_Os01g41200
Os.10535.1.S1_at--311--2851Chr01:23651944..23651968 (25 bp)
AAGTCTGCACAGATTTTGGCGGCTG
LOC_Os01g41200
Os.10535.1.S1_at--48--10871Chr01:23651959..23651983 (25 bp)
TTGGCGGCTGCCTAGTGGCTAGTAC
LOC_Os01g41200
Os.10535.1.S1_at--331--2051Chr01:23651982..23652006 (25 bp)
ACTTTTGTTTTGTCAACGTGTCATA
LOC_Os01g41200
Os.10535.1.S1_at--173--2051Chr01:23652006..23652030 (25 bp)
ACATAGTACATGTTTATCGGACGAA
LOC_Os01g41200
Os.10535.1.S1_at--560--3951Chr01:23652023..23652047 (25 bp)
CGGACGAATTCCGATCACGATTGTA
LOC_Os01g41200
Target Sequence 
GCCTGCTGAGGAGCCACTTGGAACAGGTTGTGCCGGTCACTGATCTTGAAGACGAACCGAACGCATCATCATCAGCTGTG
AAAGAACCAAAGACAGTAGCACTGAAGGTGTCTATGCACTGCCATTNCTGCGCGAGGAAGGTTGAGAAGCAAATTTTGAA
GATGGAAGGAGTGGTGTCCTTCAAGGTGGAGCTGGAGAACAAGAAGGTGACCGTGGTCGGCAATGTCAGCCCCATGGAAG
TCCTGGAGAGCATCTGCAAGGTGATGAAGTCTGCACAGATTTTGGCGGCTGCCTAGTGGCTAGTACTTTTGTTTTGTCAA
CGTGTCATACATAGTACATGTTTATCGGACGAATTCCGATCACGATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis