Browse Element(s) Details


Os.48597.1.A1_x_at

Description gb:CR285604
DB_XREF= gi:44672170
DB_XREF=CR285604
CLONE=p774f04p3
TID=Os.48597.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48597 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201530.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g411605/11FAD dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein
LOC_Os01g41110OsAffx.23616.1.S1_at11/111+23606880..23607718hypothetical protein
LOC_Os01g41110Os.51318.1.S1_x_at1/111+23606880..23607718hypothetical protein
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48597.1.A1_x_at--738--5351NONE
GAAGAGGTGCCCAATGATCCGCCGA
NONE
Os.48597.1.A1_x_at--456--8851NONE
TGATCCGCCGACGATCACCGGTGAT
NONE
Os.48597.1.A1_x_at--199--1671NONE
AGCCCAGCAAGGATTCTCAACAACA
NONE
Os.48597.1.A1_x_at--892--9691NONE
TCAACAACAGGAGTAACTAAGCGTG
NONE
Os.48597.1.A1_x_at--568--2111NONE
ACAGGAGTAACTAAGCGTGGAGCTT
NONE
Os.48597.1.A1_x_at--875--2671Chr01:23628696..23628720 (25 bp)
AAGCGTGGAGCTTAGTGTAAGACTG
LOC_Os01g41160
Os.48597.1.A1_x_at--1016--1551Chr01:23628688..23628712 (25 bp)
AGCTTAGTGTAAGACTGTGAGGACT
LOC_Os01g41160
Os.48597.1.A1_x_at--1040--7051Chr01:23628680..23628704 (25 bp)
GTAAGACTGTGAGGACTGAGAGAAC
LOC_Os01g41160
Os.48597.1.A1_x_at--307--6191Chr01:23628670..23628694 (25 bp)
GAGGACTGAGAGAACAAACATGCAC
LOC_Os01g41160
Os.48597.1.A1_x_at--360--5731Chr01:23628667..23628691 (25 bp)
GACTGAGAGAACAAACATGCACAAC
LOC_Os01g41160
Os.48597.1.A1_x_at--832--2491NONE
AACATGCACAACAATGTAGTGATGA
NONE
Target Sequence 
GAAGAGGTGCCCAATGATCCGCCGACGATCACCGGTGATCCGGACTCGATCGCGGCGCTGCACGAGATCGCCGGGAGGGT
GTCCAGCCAGCTGAAGAGGGAGGAAGGCGCGGAGGTGGTGGCGGAGCAGGCTTGCTACATGCCGTGCACCAGTGACGGGT
TGCCGGTGATCGGAGAGATGCCTGGGGTGAAGGGTTGCTACGTCGCCACCGGGCACGGCGGGTGGGGAATCCTCAACGCT
CCGGCCACCGGCGCTGCGCTCGCGGAGCTCATCCTCAACGGCAGTGCCAGCATCGTCGATCTCTCGCCGTTCAGCCCAGC
AAGGATTCTCAACAACAGGAGTAACTAAGCGTGGAGCTTAGTGTAAGACTGTGAGGACTGAGAGAACAAACATGCACAAC
AATGTAGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48597.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis