Browse Element(s) Details


Os.20265.1.S1_x_at

Description gb:AK105670.1
DB_XREF= gi:32990879
TID=Os.20265.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative extensin-like protein (P0451D05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full insert sequence.
FL= gb:AK105670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4112011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g143501/11methyltransferase, putative, TIGR00027 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein
LOC_Os01g41110OsAffx.23616.1.S1_at11/111+23606880..23607718hypothetical protein
LOC_Os01g41110Os.51318.1.S1_x_at1/111+23606880..23607718hypothetical protein
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20265.1.S1_x_at--445--531Chr01:23613542..23613566 (25 bp)
ATCGCCAGTGTACTACAGCTCGCCG
LOC_Os01g41120
Os.20265.1.S1_x_at--923--9891Chr01:23613576..23613600 (25 bp)
TACTACGAGGTTTCACCGGAGGACA
LOC_Os01g41120
Os.20265.1.S1_x_at--371--8711Chr01:23613664..23613688 (25 bp)
TGTCGCCGGAGGACAGGTACCTGTC
LOC_Os01g41120
Os.20265.1.S1_x_at--670--991Chr01:23613742..23613766 (25 bp)
AGGTGTCACCGGAGGACAGGTACCT
LOC_Os01g41120
Os.20265.1.S1_x_at--1160--3551Chr01:23613781..23613805 (25 bp)
CATCACCGGTGAAGTGGAAGCTGCC
LOC_Os01g41120
Os.20265.1.S1_x_at--894--5391Chr01:23613797..23613821 (25 bp)
GAAGCTGCCGGTGTACGAGTACTCA
LOC_Os01g41120
Os.20265.1.S1_x_at--412--4491Chr01:23613833..23613857 (25 bp)
GCCGGCAGCAACATGGAAGCCATAA
LOC_Os01g41120
Os.20265.1.S1_x_at--527--7971Chr01:23613945..23613969 (25 bp)
GGATGCTAAATCTTTTCTGTTACTA
LOC_Os01g41120
Os.20265.1.S1_x_at--957--4271Chr01:23613979..23614003 (25 bp)
CCTGATTTTCTTTTGCTTGTACTGT
LOC_Os01g41120
Os.20265.1.S1_x_at--108--7012Chr07:8197333..8197362 (25 bp)
GTACTGTATGTATTTTTCTTCTTTT
LOC_Os07g14350
Os.20265.1.S1_x_at--1102--10371Chr01:23614026..23614050 (25 bp)
TTTTCTCCTTCTTTGAATGAACAGC
LOC_Os01g41120
Target Sequence 
ATCGCCAGTGTACTACAGCTCGCCGCCGCCGCCGTACTACGAGGTTTCACCGGAGGACAGGTACCTCTCGCCGCCGCCAC
CTCCGGCGTACCACGAGGCGCCGCCACCGCCGTACTACGAGGTGTCGCCGGAGGACAGGTACCTGTCGCCGCCGCCACCT
CCAGCCTACCAAGAAACGCCGCCGCCGCCGCCGCAGTACGAGGTGTCACCGGAGGACAGGTACCTGTCGCCGCCACCTCC
ATCACCGGTGAAGTGGAAGCTGCCGGTGTACGAGTACTCATCGCCGCCGCCGCCGGCAGCAACATGGAAGCCATAAAATT
AAAATCGATTCTTTCGGGATTTTTTTTTTCACACACTATGATCATACATATTGTTAAATTTGTTGTATGTTGAGTAAAAA
AAGGGATGCTAAATCTTTTCTGTTACTACCCCTCCTTCCTGATTTTCTTTTGCTTGTACTGTATGTATTTTTCTTCTTTT
ATTTTTTTCTCCTTCTTTGAATGAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20265.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis