Browse Element(s) Details


Os.25495.1.S1_at

Description gb:AK070921.1
DB_XREF= gi:32980944
TID=Os.25495.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.16 (P0451D05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074J04, full insert sequence.
FL= gb:AK070921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4117010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25495.1.S1_at--852--231NONE
ATATAGCTCCGCGAAGGTGCAGTGC
NONE
Os.25495.1.S1_at--300--9051Chr01:23638573..23638597 (25 bp)
TGCAGTGCTACAAGAAGTGCGGCGA
LOC_Os01g41170
Os.25495.1.S1_at--912--9131Chr01:23638556..23638580 (25 bp)
TGCGGCGATAAATGCTTCCACCACG
LOC_Os01g41170
Os.25495.1.S1_at--612--8611Chr01:23638322..23638346 (25 bp)
TGGTGGCCTATACCATTCCCGAAGC
LOC_Os01g41170
Os.25495.1.S1_at--523--5511Chr01:23638248..23638272 (25 bp)
GAACAACTGATCACACATCATACCT
LOC_Os01g41170
Os.25495.1.S1_at--293--9871Chr01:23638187..23638211 (25 bp)
TACAGAGTAAATACAGCCAGGGCGA
LOC_Os01g41170
Os.25495.1.S1_at--725--6231Chr01:23638131..23638155 (25 bp)
GATGGCATATGCACGGTAATTGTCA
LOC_Os01g41170
Os.25495.1.S1_at--1104--7391Chr01:23638105..23638129 (25 bp)
GTGATCTATCTGTAAACCTGGCATA
LOC_Os01g41170
Os.25495.1.S1_at--379--8731Chr01:23638095..23638119 (25 bp)
TGTAAACCTGGCATATCAGCATATG
LOC_Os01g41170
Os.25495.1.S1_at--697--10111Chr01:23638074..23638098 (25 bp)
TATGCATGCCTACTCCTATGGATGA
LOC_Os01g41170
Os.25495.1.S1_at--648--7971Chr01:23638055..23638079 (25 bp)
GGATGAATTCTATACGTACTTTCGT
LOC_Os01g41170
Target Sequence 
ATATAGCTCCGCGAAGGTGCAGTGCTACAAGAAGTGCGGCGATAAATGCTTCCACCACGGCCCGAAGCCTGGGCCCAAGC
CCAAGCCCAAGCCGAGCCCACCAAAACCCAAGCCTGGACCGAAGCCTAAGCCTCCCAAGCCTGGGCCGAAGCCGAAGCCT
CCCAAGCCAGGGCCGAAGCCGAAGCCGAAGCCTCCAAAGCCAGGGCCGAAGCCGAAGCCGAAGCCGCCGAAGCCCGGGCC
GAAGCCGAAGCCAGGGCCGCCACAGCCCTGGTGGCCTATACCATTCCCGAAGCCGCCGTGTCCCCCCGGCGCCGACGGGT
CGTCGTCGGCGGTCGACGACAAGAACAACTGATCACACATCATACCTAAATTATACATATGATTAATTTGAGATCAAAGA
ATTTACAGAGTAAATACAGCCAGGGCGANGTCTCATTGCTGCAAATTAACTATTGTATAGATGGCATATGCACGGTAATT
GTCAAGTGATCTATCTGTAAACCTGGCATATCAGCATATGCATGCCTACTCCTATGGATGAATTCTATACGTACTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis