Browse Element(s) Details


OsAffx.21397.1.S1_at

Description gb:NM_192620.1
DB_XREF= gi:34912323
GEN=P0451D05.25
TID=OsAffx.21397.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0451D05.25 (P0451D05.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4123011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21397.1.S1_at--948--9111Chr01:23666032..23666056 (25 bp)
TGCTGCATGCTGCGTCTACCGCGCG
LOC_Os01g41230
OsAffx.21397.1.S1_at--203--7371Chr01:23666002..23666026 (25 bp)
GTGACGCACCGGCTTGCGCAACAAC
LOC_Os01g41230
OsAffx.21397.1.S1_at--394--5151Chr01:23665985..23666009 (25 bp)
GCAACAACGCTCCTCGCGATGCGTA
LOC_Os01g41230
OsAffx.21397.1.S1_at--935--3791Chr01:23665973..23665997 (25 bp)
CTCGCGATGCGTACGCACAAGTGAT
LOC_Os01g41230
OsAffx.21397.1.S1_at--920--9931Chr01:23665962..23665986 (25 bp)
TACGCACAAGTGATGTGGCTGCCGC
LOC_Os01g41230
OsAffx.21397.1.S1_at--929--4111Chr01:23665960..23665984 (25 bp)
CGCACAAGTGATGTGGCTGCCGCGT
LOC_Os01g41230
OsAffx.21397.1.S1_at--992--511Chr01:23665887..23665911 (25 bp)
ATCGATCAGCAGCGTACGGCACGCG
LOC_Os01g41230
OsAffx.21397.1.S1_at--919--1831Chr01:23665853..23665877 (25 bp)
ACGCAATCCTCAACAGGGCCGGCAA
LOC_Os01g41230
OsAffx.21397.1.S1_at--519--2491Chr01:23665842..23665866 (25 bp)
AACAGGGCCGGCAAGCGGATTGCAA
LOC_Os01g41230
OsAffx.21397.1.S1_at--260--5171Chr01:23665832..23665856 (25 bp)
GCAAGCGGATTGCAAGTTGTCAGAT
LOC_Os01g41230
OsAffx.21397.1.S1_at--605--1631Chr01:23665829..23665853 (25 bp)
AGCGGATTGCAAGTTGTCAGATTTT
LOC_Os01g41230
Target Sequence 
TGCTGCATGCTGCGTCTACCGCGCGCCACGGTGACGCACCGGCTTGCGCAACAACGCTCCTCGCGATGCGTACGCACAAG
TGATGTGGCTGCCGCGTNCNNGNGNNNNNNGNNNNCNCNNCNNNNNNNNGNNNANGAGTCGATCGATCGATCAGCAGCGT
ACGGCACGCGCGCCGGCGCACGCAATCCTCAACAGGGCCGGCAAGCGGATTGCAAGTTGTCAGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis