Browse Element(s) Details


OsAffx.21396.1.S1_at

Description tigr:9629.m03946
TID=OsAffx.21396.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4128011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21396.1.S1_at--1000--4791Chr01:23688385..23688409 (25 bp)
GCTCGGTTACTTGGACATGGGCATC
LOC_Os01g41280
OsAffx.21396.1.S1_at--72--8051Chr01:23688637..23688661 (25 bp)
GGAGATTTTGCCCAGTTTCTTGAGA
LOC_Os01g41280
OsAffx.21396.1.S1_at--882--10291Chr01:23688665..23688689 (25 bp)
TTTCCCAATGTTGAGGCACTTCATA
LOC_Os01g41280
OsAffx.21396.1.S1_at--425--7711Chr01:23688898..23688922 (25 bp)
GGGTGCCAACGAGCTCGAATTCATC
LOC_Os01g41280
OsAffx.21396.1.S1_at--467--1311Chr01:23688957..23688981 (25 bp)
AGATGGTGTTTGTCGTGGATCCTGA
LOC_Os01g41280
OsAffx.21396.1.S1_at--148--7971Chr01:23688973..23688997 (25 bp)
GGATCCTGAGAATTCGGCTTTTGTG
LOC_Os01g41280
OsAffx.21396.1.S1_at--759--7511Chr01:23688995..23689019 (25 bp)
GTGGATCAGGCCATGAGCACAATGA
LOC_Os01g41280
OsAffx.21396.1.S1_at--210--2031Chr01:23689024..23689048 (25 bp)
ACTAGCTTCCACAGACTATACCAGT
LOC_Os01g41280
OsAffx.21396.1.S1_at--1145--10151Chr01:23689082..23689106 (25 bp)
TATAGAAAAGGTCCTCCCGCGTTCA
LOC_Os01g41280
OsAffx.21396.1.S1_at--571--9311Chr01:23689096..23689120 (25 bp)
TCCCGCGTTCAGCTACATGAGAGCA
LOC_Os01g41280
OsAffx.21396.1.S1_at--1121--1531Chr01:23689117..23689141 (25 bp)
AGCATCTGATCTTTCTCTGAGTGAC
LOC_Os01g41280
Target Sequence 
GCTCGGTTACTTGGACATGGGCATCCACGCGCTTCATATCGGCGGCATGATTATCAAGGCTGGGGTGACGGATGTGAGCC
CGATGGCAAAAGTTCCTAGTGTGAAGATATTGGGCATAAATGTGAATTTTGAAGCCCGCAAGGAAATGGAGATTTTGCCC
AGTTTCTTGAGATGCTTTCCCAATGTTGAGGCACTTCATATAAAGTATAATGTGGATGAGTCCAATGGCGAGCTCAACTC
CAAGTTCTGGCAGGAGGTTGGGCATATAGAATGCGTGGAGTCGAGCATCAAGAAGGTGGTGTTCGATCAGTTCAGAGGGG
GTGCCAACGAGCTCGAATTCATCAAATTCATTCTGGAGAGGGCTCAAATGCTGGACAAGATGGTGTTTGTCGTGGATCCT
GAGAATTCGGCTTTTGTGGATCAGGCCATGAGCACAATGAAGTCACTAGCTTCCACAGACTATACCAGTGCCAGTAAGAA
GTGTTCACTGATGATGGTTGGATATAGAAAAGGTCCTCCCGCGTTCAGCTACATGAGAGCATCTGATCTTTCTCTGAGTG
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis