Browse Element(s) Details


Os.24958.1.A1_at

Description gb:CA763178
DB_XREF= gi:25807217
DB_XREF=BR060012A10E01.ab1
CLONE=BR060012A10E01.ab1
TID=Os.24958.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.24958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (P0451D05.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g412504/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24958.1.A1_at--1016--6711Chr01:23675846..23675870 (25 bp)
GTTCTGGGATCTAGTAGGCTACACG
LOC_Os01g41250
Os.24958.1.A1_at--480--6731Chr01:23675903..23675927 (25 bp)
GTTTCAAGCTGCTCGAGGCAAAGAC
LOC_Os01g41250
Os.24958.1.A1_at--746--1051Chr01:23676044..23676068 (25 bp)
AGGGTGTGTGTCTGCAGATGCTACA
LOC_Os01g41250
Os.24958.1.A1_at--134--6671Chr01:23676128..23676152 (25 bp)
GTTGCAGAGTGACCCATTTGCTTGC
LOC_Os01g41250
Os.24958.1.A1_at--236--9831Chr01:23677402..23677426 (25 bp)
TAAACGTTGCCCGTCAGAATTCGGA
NONE
Os.24958.1.A1_at--364--5571Chr01:23677425..23677449 (25 bp)
GAAAGACTGCGACCAGCCAGAGTCA
NONE
Os.24958.1.A1_at--1087--1331Chr01:23677443..23677467 (25 bp)
AGAGTCAGGCCGTGATCCAAGGAAT
NONE
Os.24958.1.A1_at--1080--2131Chr01:23677494..23677518 (25 bp)
ACAGTTTATGCTTTGGTTCTGCTAC
NONE
Os.24958.1.A1_at--351--7871Chr01:23677508..23677532 (25 bp)
GGTTCTGCTACCTTGTACAACTAAA
NONE
Os.24958.1.A1_at--990--2251NONE
AAATCTTGCTAGCTCCATTTGTAGT
NONE
Os.24958.1.A1_at--176--8951Chr01:23677567..23677591 (25 bp)
TGACGTCGAATTGCTCTCCTTATAA
NONE
Target Sequence 
GTTCTGGGATCTAGTAGGCTACACGGAATGTGTCCATTCACATCTGAGGAAGTTTGTGTTTCAAGCTGCTCGAGGCAAAG
ACAGTGAGCTGGCATTTGTAAAGTTTGTAATGGGAAGAGNCCAAATGTTGGAGCAGATGCTTATTTTTGTGGATGATGGT
TCCTCTAGAGNTGTCGTGNTGAGTCATTTGTCTTCAGAAGGGTGTGTGTCTGCAGATGCTACAGTGGTTGTGGAGAGTCA
TGACAAGTCTTATCCTTGGAATTTCCATANAGCCAGCAACATGTTGCAGAGTGACCCATTTGCTTGCTCNNCTTGNNGNC
GNANCNNNTNTNNNNNNNNNNNNTNNAANNANTAAACGTTGCCCGTCAGAATTCGGAAAGACTGCGACCAGCCAGAGTCA
GGCCGTGATCCAAGGAATGGAAGAGCATGTTTATCATAGTTTGTACAGTTTATGCTTTGGTTCTGCTACCTTGTACAACT
AAATGGATTAAATCTTGCTAGCTCCATTTGTAGTTGTTGACGTCGAATTGCTCTCCTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24958.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis