Browse Element(s) Details


OsAffx.20015.1.S1_x_at

Description tigr:9629.m03948
TID=OsAffx.20015.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4130010/11hypothetical protein
LOC_Os12g388209/11hypothetical protein
LOC_Os09g129001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed
LOC_Os01g41260OsAffx.9163.1.S1_at11/111+23678694..23680783F-box domain containing protein
LOC_Os01g41270Os.33421.1.S1_at11/111+23683842..23686800F-box domain containing protein, expressed
LOC_Os01g41280OsAffx.21396.1.S1_at11/111+23687474..23689180F-box domain containing protein, expressed
LOC_Os01g41290Os.55061.1.S1_at11/111+23690649..23692725F-box domain containing protein, expressed
LOC_Os01g41300OsAffx.20015.1.S1_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.20015.1.S1_x_at10/111+23694312..23695271hypothetical protein
LOC_Os01g41300OsAffx.17674.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41300Os.52861.1.S1_at1/111+23694312..23695271hypothetical protein
LOC_Os01g41310Os.52766.1.S1_at11/111+23703446..23705374F-box domain containing protein, expressed
LOC_Os01g41320OsAffx.23619.1.S1_at11/111+23711049..23711539hypothetical protein
LOC_Os01g41330OsAffx.2204.1.S1_at11/111+23714724..23715276hypothetical protein
LOC_Os01g41340OsAffx.11423.1.S1_at11/111+23719803..23721459F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20015.1.S1_x_at--120--8671Chr01:23694342..23694366 (25 bp)
TGTGGGCGGGAGACGATGCGGCGGT
LOC_Os01g41300
OsAffx.20015.1.S1_x_at--202--994Chr05:21902735..21902759 (25 bp)
AGGAGGCAAGATGGCGGCAACCTTC
NONE
OsAffx.20015.1.S1_x_at--629--3232Chr01:23694501..23694525 (25 bp)
CAAGATGGCGGCAACCTTCGCGGCG
LOC_Os01g41300
OsAffx.20015.1.S1_x_at--573--1731NONE
ACCTTCGCGGCGCTTATGGAATTAA
NONE
OsAffx.20015.1.S1_x_at--553--373Chr05:21903423..21903447 (25 bp)
ATCAATGCACGCTATGATTTCGCAG
NONE
OsAffx.20015.1.S1_x_at--628--3194Chr05:21903425..21903449 (25 bp)
CAATGCACGCTATGATTTCGCAGTT
NONE
OsAffx.20015.1.S1_x_at--699--653Chr05:21903427..21903451 (25 bp)
ATGCACGCTATGATTTCGCAGTTTC
NONE
OsAffx.20015.1.S1_x_at--940--5093Chr05:21903429..21903453 (25 bp)
GCACGCTATGATTTCGCAGTTTCTG
NONE
OsAffx.20015.1.S1_x_at--614--3353Chr05:21903430..21903454 (25 bp)
CACGCTATGATTTCGCAGTTTCTGG
NONE
OsAffx.20015.1.S1_x_at--926--1833Chr05:21903431..21903455 (25 bp)
ACGCTATGATTTCGCAGTTTCTGGA
NONE
OsAffx.20015.1.S1_x_at--567--4873Chr05:21903433..21903457 (25 bp)
GCTATGATTTCGCAGTTTCTGGACC
NONE
Target Sequence 
TGTGGGCGGGAGACGATGCGGCGGTGGATCCGGNTGCCGCTCTGCGCCCCATGCNCNTGGATCCAGCTANNNNGGCGNNN
NNNNNGCGCGGTNGCGGGCGGCGCGTCCGNGGATCCGGNGCCCCCTTCCTCCCGCNTGGATCCTGCACGGNTGAAGACTA
TGGGCAGGAGGCAAGATGGCGGCAACCTTCGCGGCGCTTATGGAATTAANGCCAAATCAATGCACGCTATGATTTCGCAG
TTTCTGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20015.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis