Browse Element(s) Details


OsAffx.29979.1.S1_x_at

Description tigr:9637.m01966
TID=OsAffx.29979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F24O1.3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2254011/11transcription factor jumonji, putative, expressed
LOC_Os09g220401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22500Os.27389.2.S1_a_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_s_at11/119+13570645..13575072hypothetical protein
LOC_Os09g22500OsAffx.29978.1.S1_at5/119+13570645..13575072hypothetical protein
LOC_Os09g22500Os.52345.1.S1_at1/119+13570645..13575072hypothetical protein
LOC_Os09g22510Os.8846.1.S1_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.12988.1.S1_x_at11/119+13577168..13580613hypothetical protein
LOC_Os09g22510OsAffx.4565.1.S1_at1/119+13577168..13580613hypothetical protein
LOC_Os09g22520OsAffx.17849.1.S1_at1/119+13582619..13583644hypothetical protein
LOC_Os09g22530OsAffx.6368.1.S1_at10/119+13584768..13585925expressed protein
LOC_Os09g22540Os.50915.1.S1_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_s_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.29979.1.S1_x_at11/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540Os.50043.1.A1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22540OsAffx.23616.1.S1_at1/119+13594421..13600888transcription factor jumonji, putative, expressed
LOC_Os09g22550NANA9+13602143..13602367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23050NANA9+13612551..13613024hypothetical protein
LOC_Os09g23060OsAffx.8676.1.S1_at2/119+13617990..13619315hypothetical protein
LOC_Os09g23070Os.46338.1.S1_at11/119+13625138..13628838Malonyl-CoA decarboxylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29979.1.S1_x_at--545--2531Chr09:13594424..13594448 (25 bp)
AACTACATATACTGCCCTACATTGG
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--101--1291Chr09:13594465..13594489 (25 bp)
AGATCTCACACACTTCCAGAAGCAT
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--1131--7111Chr09:13594537..13594561 (25 bp)
GTCATGTTTGAGTTGGGAGCCACCA
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--511--7011Chr09:13594570..13594594 (25 bp)
GTCTAAAGTACATGGCACCGGCACT
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--1048--5071Chr09:13594584..13594608 (25 bp)
GCACCGGCACTAGTCCTGAGATGAA
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--309--51Chr09:13594626..13594648 (23 bp)
ATTGTTTATCTTGCTGTGAGGTCGA
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--978--8111Chr09:13595619..13595643 (25 bp)
GGACTGGCCTACATCAAATCATTTT
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--313--1411Chr09:13595648..13595672 (25 bp)
AGCTTTTGCCTTCCCATGGAGTTAA
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--750--5332Chr09:13595712..13595736 (25 bp)
GAAGTCTGGTTTGCTGAATGTCTCA
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--991--2631Chr09:13595736..13595760 (25 bp)
AACCTTGCTTCCTGATGACATCTTA
LOC_Os09g22540
OsAffx.29979.1.S1_x_at--1012--431Chr09:13595755..13595779 (25 bp)
ATCTTAAAGCTTGACATGGGCCCAA
LOC_Os09g22540
Target Sequence 
AACTACATATACTGCCCTACATTGGATAATGGAAAGCCAGAAGATCTCACACACTTCCAGAAGCATTGGGTGAAAGGCGA
ACCCGTAATTGTTCAACAGGTTCTCAAGAAAATGTCATGTTTGAGTTGGGAGCCACCAGATATGTGGTCTAAAGTACATG
GCACCGGCACTAGTCCTGAGATGAAAAACGTGAAGGCTATTGATTGTTTATCTTGCTGTGAGGTCGAGATATGCACTCAA
GACTTCTTCAATGGGTATTATGAAGGTCGGATGTATCAAAATCTATGGCCTGAAATGCTTAAATTGAAGGACTGGCCTAC
ATCAAATCATTTTGAAGAGCTTTTGCCTTCCCATGGAGTTAAATACATGAATTCTTTACCTTTTCAACCATACACAAACT
TGAAGTCTGGTTTGCTGAATGTCTCAACCTTGCTTCCTGATGACATCTTAAAGCTTGACATGGGCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29979.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis